Oorn009328.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017738.1:114832823-114836638[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.34 1.3e+02 5.6 0.0 31 45 20 35 18 35 0.92 2 2 7.2e-18 2.7e-15 58.9 0.0 1 44 42 86 42 87 0.96
Sequence Information
- Coding Sequence
- atggacactttacgCAAAATAATTTTCTACACTAGATCTCAAGAGTGGATACTGGCAGGGACACTTTATGGAAGGTGTAAAAGAGAGGGAATTGAACTGTCAAGATCGAATCCAACCCCATGGTCTGAAGACGCTATGAATGAAGCCTTGGTTGCTGTACGAGTTGGTCATATGTCAATAAATCAGGCAGCTATTCATTATAATCTCCCATATAGTTCACTATACGGTCGCTTCAAACGTGGCAAATATGATACTTCGACCCCGACCGCAACATCTGCCAATACCGGTAATACATCCAGTAATATGGATATAATAGAACACAGTCCTGAAAATTCGTCGCATATGTTCCAGCAATTCCAATACAGCCCTGGACATCCGACAACGCAACCTCAGCAGCATCAACAGCCacaccaacaacaacagcagcagcaacagccACAGCCCCAAATGCATCTGCAACATCAACAACCTCAGCAACAACAACCTCAACATCATCAGCCGCAACCGCAACAGCACCACTTGCAACAGCACGCTCAACATCCCCAACTTCAGCATCAACCACCCCAGCATATTCCGCAACAGCCCACTCATATTCAGCAGCTCGATGTAGTTACATCGAGCAGTCAAGTTCATACCCAACCTGGGCAAATCCAACAAATACAATACCATCATCATAGTGCCCCGGAGAGAAGTTGA
- Protein Sequence
- MDTLRKIIFYTRSQEWILAGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVRVGHMSINQAAIHYNLPYSSLYGRFKRGKYDTSTPTATSANTGNTSSNMDIIEHSPENSSHMFQQFQYSPGHPTTQPQQHQQPHQQQQQQQQPQPQMHLQHQQPQQQQPQHHQPQPQQHHLQQHAQHPQLQHQPPQHIPQQPTHIQQLDVVTSSSQVHTQPGQIQQIQYHHHSAPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -