Oorn009333.1
Basic Information
- Insect
- Odontomyia ornata
- Gene Symbol
- -
- Assembly
- GCA_963969285.1
- Location
- OZ017738.1:114847718-114855170[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2e-10 7.7e-08 35.1 0.0 1 38 579 617 579 622 0.91 2 3 1.9e-12 7.3e-10 41.5 0.1 2 39 634 671 633 674 0.94 3 3 1.1e-11 4.4e-09 39.1 0.0 1 30 688 717 688 718 0.97
Sequence Information
- Coding Sequence
- ATGCCATTTCACAACATCTTCGCCAAATTCCCCGAGTTAACGAGCTTTGTGACAACGACACAAACCAAAAAGGCAATACTCCAACACCACATACTGACGAAAGGCCCGCCAATTTCGGAACGAGTTCGCCGAttaccgcaggacaaatatcaaGCCGCAAAGGCTGAGTTTGAATACATGGTGGAAAATGGAATTTGTCGTCCTTCAAGTGGCCCATGGGCTGGTCCACTTCATTTAGTCCCGAAAAACGAAGTAATCAAGCCGCCACCAGAAAAAGTTAATGCGATACTGGAATGTGAAAAGCCAAAAAGTATTCAAAGTTTACGAAGATATTTAGGCATGATCAATTTTGATCGGAAATTCCCCAAAaatgccgcagaaGGCCTCCTGAGGACAGCTGAGCAATTAAAAATCAAAGGACTGTGTGAAACGTCCGATCAATCAGAGGCAGCCGATGGTGCTCTAATTGCAGTACCAGTATCAGAATCAGTGCAATCACAACAGTCACAACAGCTGACCAGCGCATCAAATACCGTTGGTACAGTGACACCAGTAAACACAAATCCAGTTCGCAAGACAAGAATTCGCAAGCGATCCAAATCACCCGACACAAATGCATCTCTAACCAATTCCAATCAACAAACATTTACATCATCATCAGTTGTTGGTTCCAATTCGTCAGCTTCCAATTTCACAACAGTAGGGTCAGTGCCAATAACAACTGTTGCTGGTTTCAAACCAGAGTCACATAACCAACAACAACAGcaccaacaacatcaacagcagcatcaccatcaccaccaacagcaacaacaacaacaacatcatcaaCACCAACAGCAACAGCATCACCAACATCAACAGCAACATTTGGCAGCAGGATCTGCCATTGATAGTGGTCAAGACTCGAATTCGAGCTCTGTTAAGCcgacaaaaattataaaaactgaAGAGGTATCAAATAATGGTGGAGGTACCATTGTCCCAGCTAGTGGTACTATTTTAACACAGATTGTTGTATCGCGGGATAAAGATAATAAAACCATGACCAGCCTAGGAATGGGAATTAATGGGGGCTTGCTGGGAGTCCCAATGGGATTCTTGGACTTCGCGCCAGAGCCACCTGCTCCATCAGCGACACCCGTGACCGAGCATGTAGATATGTCCTGCACACCTAGTACTGATACAAGAGACTTATCAAATCCCACCGAAACCCTCGATATAGACAATCACATAGCGCAGCATATAATACAACGTTTAGATCAATCGCCAATGGATCAGATGCATCATCAAACATCATCATCTGATGATaataaaatatcaaaccaaattatacaaaatattaaaacagaaattgttgataaacaacatcatcatcaacaccaccaacagcagcagcagcatCATCATCACCAGCAccatcaacaacagcagcaacaacagcaacagcagcagcaacaaatgCAAGGACAATCACAACAACAAAGTCACCATCAAGATTTGTCTGGTACAACGGTCATGGAAATAGATCCGAGTAATATAAAACACGAGCCAGCAATGATTATTACTCCGGAAATAGTGACAATGATGACTACAGGAAATATGGATATTTATAATTCAGATACTAGTGAAGATTCTCTCATGATTGCCAACGGTTCGCCTAACGATAACAACGAGCCTCAATATACGAATCTCGATCAACAAGATGTCAAACCCAATGGGCCGAAAACATGGACACCCGAAGATATGAATTCAGCACTAGAAGCGTTGAAAAATCATCATATGAGTCTAACAAAGGCGTCTGTAACATATGGTATTCCTTCCACTACTCTATGGCAACGTGCCCATCGAATGGGTATTGACACGCCGAAGAAAGAAGGCACTACGAAATCGTGGAATGAAGAAGCTCTGAATAATGCGCTCGAAGCTCTGCGAACAGGTCAAATCTCCGCCAACAAGGCTTCCAAAGCATACGGCATTCCGTCCTCAACACTGTACAAAATTGCACGACGCGAAGGAATACGATTGGCGGCACCATTTAATGCAGCGCCAACAACGTGGACACCCGAAGATTTGGAACGCGCATTAGAAGCTATTCGATCTGGTCAAACGTCCGTCCAAAAAGCAAGCACGGAATTTGGTATTCCGACAGGTGAgattatttga
- Protein Sequence
- MPFHNIFAKFPELTSFVTTTQTKKAILQHHILTKGPPISERVRRLPQDKYQAAKAEFEYMVENGICRPSSGPWAGPLHLVPKNEVIKPPPEKVNAILECEKPKSIQSLRRYLGMINFDRKFPKNAAEGLLRTAEQLKIKGLCETSDQSEAADGALIAVPVSESVQSQQSQQLTSASNTVGTVTPVNTNPVRKTRIRKRSKSPDTNASLTNSNQQTFTSSSVVGSNSSASNFTTVGSVPITTVAGFKPESHNQQQQHQQHQQQHHHHHQQQQQQQHHQHQQQQHHQHQQQHLAAGSAIDSGQDSNSSSVKPTKIIKTEEVSNNGGGTIVPASGTILTQIVVSRDKDNKTMTSLGMGINGGLLGVPMGFLDFAPEPPAPSATPVTEHVDMSCTPSTDTRDLSNPTETLDIDNHIAQHIIQRLDQSPMDQMHHQTSSSDDNKISNQIIQNIKTEIVDKQHHHQHHQQQQQHHHHQHHQQQQQQQQQQQQQMQGQSQQQSHHQDLSGTTVMEIDPSNIKHEPAMIITPEIVTMMTTGNMDIYNSDTSEDSLMIANGSPNDNNEPQYTNLDQQDVKPNGPKTWTPEDMNSALEALKNHHMSLTKASVTYGIPSTTLWQRAHRMGIDTPKKEGTTKSWNEEALNNALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRSGQTSVQKASTEFGIPTGEII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -