Basic Information

Gene Symbol
stc
Assembly
GCA_010583005.1
Location
NW:827529-839603[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 1.1e+04 -4.3 1.6 15 19 531 535 530 535 0.81
2 14 0.13 7.5e+02 -0.3 0.3 4 10 564 570 563 571 0.94
3 14 4.3e-06 0.025 14.0 12.1 4 18 581 595 579 596 0.94
4 14 1.3e-06 0.0074 15.7 14.8 1 18 632 649 632 650 0.97
5 14 3.5e-06 0.02 14.3 11.7 1 19 688 706 688 706 0.98
6 14 1 5.9e+03 -3.2 0.7 5 10 735 740 735 740 0.94
7 14 4.2e-06 0.024 14.0 13.0 4 18 753 767 746 768 0.86
8 14 2 1.1e+04 -4.6 1.6 5 10 797 802 797 802 0.90
9 14 0.0089 51 3.4 11.3 1 11 808 818 808 830 0.88
10 14 7.9e-10 4.5e-06 25.9 10.4 1 19 835 853 835 853 0.98
11 14 1.4 7.9e+03 -3.6 0.5 6 10 882 886 881 886 0.86
12 14 2 1.1e+04 -6.9 10.1 10 19 900 910 892 910 0.70
13 14 1.1e-06 0.006 16.0 10.4 1 16 946 961 946 971 0.90
14 14 1.9e-05 0.11 11.9 11.5 1 18 978 996 978 997 0.90

Sequence Information

Coding Sequence
ATGGCCACTTGGGACGGTTCGTACCCAGCGGAGGAGGAATCCAACTATTTCGTTTATTCCGGCCAGAACGCGCCCGGCACCGCCGTAGAGTCTTGGCCGTATTTCACCGGCAACTCGACCGGGAACCCCGCGTACCTGCCCGACATTGCCTCAGGGAACTATTTTCCCCCTGCGAGTGGCGGTCAGCATATGTACGAGCAGAACAGGTCTACCTCCGACTCCGGCTTCTATACGAACATTCTGCCGATACCGTCGAACATGGTGCCTTTGGGAAATTCCTATCAGGAACATATACTGCCAAACACTTCCCCAGTGGACGGCGTACCGAACAGTTTGCAGCACTCCGCGAAGGGTGCTCGATTCTTACGCAATGCATCGTCCTCCCGCGACAGTTACAATCGGAGACCTAGGAGTAACCGGATGACCGGTAATTACGCGTCGGAAGGGGATATTCAGTCCAGCATAGTGGTGAACTCGAATCTACACCCCACAGCCAGTGAATTTGTGCCAAATTGCGATGCAAAATTTAGGAAGGACAAGTTTAACAAGAGTGACACTTTTAACAATGCAGGTGGAAGTAACTTCAGTGTGCAGGGTTGTAGGCCAAAATCAGTCGAGGTGTCTTTGCCAGATAACAGATATAACAAGGGTGAAAGACGCTATGACAATAAGAGGAATATGTATTATAAGCAAAGGAGCCCAGAGGATGCACCGTCTATAAGATCCGATTATAAGGATGCCTATAGAACGTATGGTGCAAAGAGTTACAACAAGTTTCAGAAtgacaaatattataaaaaaaatattaaaagacgTCAAACTGACGTGTCATCCGGCATGGAACAGCACGTTGTCAAAAAACCTATCGCAACTGACTCTACCAGCTCGTCCATGTCCAGCAGTCTGGTGGATAAGATCTCGGTTGAAGGGATTCTGGAGGACGACTTCTTGAACATTAACGCGACTAAGGAGGAGACGCTATCACACGAAAACAATGACTCGGAAAGCACGTCGTCGAGAAGCGACATGCAACGGAACGACAAATCCAAGCGATTCAGCAACCACGCCAATACCTTCAACTATCACAAATACAATCCGGACAGGCCCGAACTCGTTGGTAGAATTACGAGAAGATACACGGGTAACAGCAGAAGCGAAAGATACGAGAGCAATTacaaaggaaaaaagaatagCTTCAATAACCAGGCTGGTTCTAGAGGTAACGGTTACGGCAAGAGAAGTGGAAATGAGAAATTGGACGATAGAGACAATAAAGACGGTAACAATGAGGAGATGACGAATCACAAGGAGAAGAAAGTGGAGAATTGGAGGGATAGAACAGAAAGTAACGGGACAACGGCGCATACGCAGAGGAGAAATCTGCAAAAGAAATACGAGATCGATGACGACgcgagtcagagagagagattgaCGGAACAGCTGAACAGAGGAGCACTGGAATGTCTCGTTTGTTACGAGCATATCAAGCAAAGCGACTATGTGTGGTCCTGCGCTAACTGTTATCACGTCTTACATCTGAAATGTATCAAAAAATGGGCCAAGTCGTCGCAGATCGATAAAGGTTGGAGATGCCCGGCTTGCCAAAACGTCAGTTCCGTCGTACCGATGGATTACTATTGCTTCTGCGGGAAAATGAAGATGCCGGAATGGAATCGTCGGGACGTGGCGCATTCGTGCGGCGAAACCTGCGGTCGTAATCTATCGAAGAAGAGCTGCGTGCACAAATGCACTCTGCTCTGCCATCCCGGCTCTTGCCCGCAGTGTGTATCGATGGTGACCAAGTATTGCGGTTGCGGCAGAACCTCGCAGACGCTCCAATGTAGCGCTCACAAACCGCTACTCTGCGACTCAATATGCGGCAAAGATCTACCGTGTGGCAAGCACGTCTGCGAGAGACAATGCCACCAAGGGGAGTGCGGCACTTGCGACAAGACTGTGCAGCAAACATGTTTCTGTGGCAAGAAGACTCAGGAAGTGCCTTGCCGAGCCAATGTTCCGGATACGTATTCCTGTGATAATATCTGTAACAAAAAGCTCGACTGCGGTAAACACAACTGTCGGAAGATCTGTCATCCGGATTCTTGCGAGTCTTGTTCCTTGACGCCCGATAGAGTTACAACCTGTTGTTGCGGTCAGACGCCATTaacggagaagagagagagttgtCTAGACCCCGTGCCGACTTGCGACAAGATCTGCTCGAAGCGTCTTAAGTGTGGCCAGCCGAGTAATCCGCACACCTGCAAGGCATCGTGTCACACGGGCGAATGCCCAGAATGCGACTTGAGCAGTGATGTCAAGTGTCGATGCGGTAACATGGACCGGGAGATCGCTTGCCGAGATTTGACGAGCAAGGCCGATGACGCACGTTGCGAGAAGCGCTGCAAGAAGAAGAGATCTTGCGGCAAGCACAACTGCAATCAGCTATGTTGCATCGATATCGAGCATATCTGTCCTTTACCGTGCTCGAAGACTCTGAGCTGCGGTCGACACAAGTGTGAACAGAGATGTCACATGGGAAGATGCATGCCTTGTTGGCAAAGCAGCTTCGACGAGCTATATTGCGAGTGTGGTGCTGAGGTGATCTATCCGCCGGTTCCGTGCGGCACAAGGAGACCCGCCTGCAACCGGCCATGCTCTCGTCAGCATGCCTGCGGTCACGAAGTGCTGCACAACTGCCACAGCGAGCCTACGTGCCCGCCGTGCAGCGTACTAACTCAGAGATGGTGTCATGGCAAGCATGAGCTGAGGAAGGCAGTAGCGTGCCACGTGAGCGAGATCTCGTGCGGTCTGCCGTGTAATAAACCGTTGTCGTGCGGCCGGCACAAATGCATTACAATGTGCCACTCTGGGTCCTGCGAGAAACCCGGTCAGCAGTGTATACAACCTTGTGTCATCACGCGAGAATTATGCGGGCATATTTGCGCTGCTCCGTGTCACGATGGCAAGTGCCCGGATACGGCCTGTAAAGAGATGGTTAAAGTGACATGCCAGTGTGGACATAGAACCATGAGCCGTACTTGTGTCGACAATGCGCGGGAGTATCAGAGAATAGCTAGCAACATATTGGCCAGTAAGATGGCCGACATGCAGCTTGGTCATTCCGTCAATCTAGAGGAAGTCTTCGGACAAGGCGCGAAGAAGCAGAATCAGTTGAAGACTTTGGAATGTAACGATGAGTGCAAAACGATTGAGCGAAATCGAAGATTAGCTTTGGGACTTCAGATCGTCAATCCGGACTTGAGCGGCAAGCTGATGCCGAGATACAGTGATTATATGAAACAGTGGGCCAAGAAGGACCCGCATTTCTGCCAGATAGTCCACGAAAAGCTCACGGAATTGGTGCAGCTTGCGAAAACGTCGAAGCATAAGTCCCGGAGTTATTCGTTCGACAGCATGAACAGAGACAAGCGCCACTTTGTGCACGAGTCATGCGACCACTTCGGCTGCGAGAGTCAGGCGTACGATGAGGAGCCGAAGAGAAACGTAGTCGCGACTGCCGTAAAAGATAAGTGTTGGCTACCAAGTTATAGTTTATTGGAGATAGTGCAGAGGGAGAATGGGCAGAGGAAAGTTCCAGGACCGGTACTTAATACTTCTAGGGGAAACAGCTCTACAAAGACTGTCCTACCGGTGAAGAGTCCACAGTTGTCAACTTCTAAAATCCCTGATAAAGAAATAGACTATTTTGATTATCGAGGATAA
Protein Sequence
MATWDGSYPAEEESNYFVYSGQNAPGTAVESWPYFTGNSTGNPAYLPDIASGNYFPPASGGQHMYEQNRSTSDSGFYTNILPIPSNMVPLGNSYQEHILPNTSPVDGVPNSLQHSAKGARFLRNASSSRDSYNRRPRSNRMTGNYASEGDIQSSIVVNSNLHPTASEFVPNCDAKFRKDKFNKSDTFNNAGGSNFSVQGCRPKSVEVSLPDNRYNKGERRYDNKRNMYYKQRSPEDAPSIRSDYKDAYRTYGAKSYNKFQNDKYYKKNIKRRQTDVSSGMEQHVVKKPIATDSTSSSMSSSLVDKISVEGILEDDFLNINATKEETLSHENNDSESTSSRSDMQRNDKSKRFSNHANTFNYHKYNPDRPELVGRITRRYTGNSRSERYESNYKGKKNSFNNQAGSRGNGYGKRSGNEKLDDRDNKDGNNEEMTNHKEKKVENWRDRTESNGTTAHTQRRNLQKKYEIDDDASQRERLTEQLNRGALECLVCYEHIKQSDYVWSCANCYHVLHLKCIKKWAKSSQIDKGWRCPACQNVSSVVPMDYYCFCGKMKMPEWNRRDVAHSCGETCGRNLSKKSCVHKCTLLCHPGSCPQCVSMVTKYCGCGRTSQTLQCSAHKPLLCDSICGKDLPCGKHVCERQCHQGECGTCDKTVQQTCFCGKKTQEVPCRANVPDTYSCDNICNKKLDCGKHNCRKICHPDSCESCSLTPDRVTTCCCGQTPLTEKRESCLDPVPTCDKICSKRLKCGQPSNPHTCKASCHTGECPECDLSSDVKCRCGNMDREIACRDLTSKADDARCEKRCKKKRSCGKHNCNQLCCIDIEHICPLPCSKTLSCGRHKCEQRCHMGRCMPCWQSSFDELYCECGAEVIYPPVPCGTRRPACNRPCSRQHACGHEVLHNCHSEPTCPPCSVLTQRWCHGKHELRKAVACHVSEISCGLPCNKPLSCGRHKCITMCHSGSCEKPGQQCIQPCVITRELCGHICAAPCHDGKCPDTACKEMVKVTCQCGHRTMSRTCVDNAREYQRIASNILASKMADMQLGHSVNLEEVFGQGAKKQNQLKTLECNDECKTIERNRRLALGLQIVNPDLSGKLMPRYSDYMKQWAKKDPHFCQIVHEKLTELVQLAKTSKHKSRSYSFDSMNRDKRHFVHESCDHFGCESQAYDEEPKRNVVATAVKDKCWLPSYSLLEIVQRENGQRKVPGPVLNTSRGNSSTKTVLPVKSPQLSTSKIPDKEIDYFDYRG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00770051; iTF_00452919;
90% Identity
-
80% Identity
-