Basic Information

Insect: Odontomachus brunneus
Gene Symbol: ush_1
Assembly: GCA_010583005.1
Location: NW:644188-832035[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.004 0.26 11.2 0.0 3 20 294 311 292 313 0.91

2 8 3.3e-05 0.0021 17.8 1.3 1 23 343 365 343 365 0.98

3 8 0.082 5.2 7.1 1.9 2 20 404 422 403 424 0.93

4 8 0.011 0.71 9.8 4.4 2 21 638 657 637 658 0.94

5 8 0.043 2.7 8.0 0.0 3 20 687 704 685 706 0.91

6 8 0.013 0.81 9.7 0.0 2 23 745 766 744 766 0.95

7 8 0.0068 0.44 10.5 1.4 1 23 772 794 772 794 0.99

8 8 0.073 4.6 7.3 0.5 3 21 895 913 894 914 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.004	0.26	11.2	0.0	3	20	294	311	292	313	0.91
2	8	3.3e-05	0.0021	17.8	1.3	1	23	343	365	343	365	0.98
3	8	0.082	5.2	7.1	1.9	2	20	404	422	403	424	0.93
4	8	0.011	0.71	9.8	4.4	2	21	638	657	637	658	0.94
5	8	0.043	2.7	8.0	0.0	3	20	687	704	685	706	0.91
6	8	0.013	0.81	9.7	0.0	2	23	745	766	744	766	0.95
7	8	0.0068	0.44	10.5	1.4	1	23	772	794	772	794	0.99
8	8	0.073	4.6	7.3	0.5	3	21	895	913	894	914	0.92

Sequence Information

Coding Sequence: atgcgaggggtcAGGAGCCTTACACGTGTATCTTCGTGTGATCGAATCGCACCCACGCGTGTGTCAGTGTtgtcagtgccacgacggagGATGCTGAGGATCGAGAAGCCAGGACGAACAGAATACAGCATGCCGGGACGATACATCATACATTTCCAAGGGGAGGATGAGGAGTGGAGTGACTCGGAGAAGACCCCGTCGGTGAGCAGCGGCGTGGATGGCGGCGGATCAGCGGTGTCAAGCCCTGTTGCACCGGTGGTCGAAGAAGACTCGAGTTTACCGCCCCCGCCGAGACTCAACCCTGTTTTGTCCTCGGTCAATTCTGCCAACGAGGACCTCAGAATACGTCTTAGTGTACTTCCCGAAGAAACTAGGAAGCGTCTCGCTAGCCTCACCGAGGATATCGAGGTTGCCAAGAGCATCAGAAGCCATGCACCGTCCAGGAGCGTACGCACGCGAGAATCGAGTCCCAAGGATGTTGAAGAGGAACAGGTGGTGGTCAAGGAGGAAGAGTGTCAACCGAGGTCGTCATCCTCCTTATCCTCTTCCACCAGGAAACGAGATGCCGTGTGCCGTAGGGACTCGGAGGACTCCGCGAGACGGTCTGACGAGTCCGCCACTGAAGCCAAGAGGATGAAGCCCGAAGATGAGGCAGCACCAAGACTGAGACTCAATGCTAGTCTGGCGACGGATCCCGCCCTGAgacccgccgccgtcgccgctctTACCGTGAAGCCCGAGAACACCTCGCCGCCAAATCCGACTCCGCCGCTGCCAGCTGGTCTCCAGAATGCAATCGCGTCCGGTCGCTTGTTTGTTCTGCCAACCGACGGCAAGGAGACGATCACAGTAGAGCCGGCAAGGCCGACTGCGCTGATCTGTCCACCATGTGGCATACGCTTTAGTTCGGCGAGCACTTTGGAAGCGCATCGCACTTACTATTGCGCCCACCGACCGCGTTTAGAGGAAGATGCGGCGAACGACGAGGATGACGACAAGTCTGGCAAATACGAGGTGCGAAAGGCGTACGCATGTCCTCACTGCTCGTACAGCGCGGATAAGAAAGTATCGTTGAACCGCCACATGCGAATGCACGCGGCATCGCCGGCACCACCAACGATACCACCAGCGAACCCAACCCCGACCAACAACCCTGTCGCCGGTCAAACAACCGCCTCCAACGGTTCTCTCAACGAGGAAGTTGAGAAATATTGTAGGAATTGCGACATCAGATTCAGCTCTTTGAAGACGTACAGGGCACATAAAACGCACTACTGCAGTACCAGGCACGTGGTGAAGGACTCCGTGCCAACGCCGGCGACGCCGCAGTCTTCGGTCAAGGCGTCTCCGCCAAcaagttcgagtcctggcgACTCACCACCCCCACAACCCTGCCTGGCACTGCCTACCAATCCCCCCATCGTCTTACCGTACACGGTGTTCCGCGGCGCGAGTGTTCTCGCCGCGCCAGCTCTTCCACTTCCCGATACGGTGTACTATCTTCTGCCAGACGGTACCCTCCAACCAGTAACGAGGGGTCTTCCTCCAGCAACGCAAAACGCTACAATGGAACCGCCAGCTGTTCTAAAGGCGGCAAACAAGCCCTCAACGCCGGCGTCAGTAGTTACAGCGTCCACGTCGCCGTCCGTCTTGGCACCCCTCGATCTCAGCGTGCGCAGATCGCCGGGTCACCAGGACGAGAAGGAGAACAGGATGTCACCGGCGCCGTCGTCTCTGCCTCCGCCGCCAGGTAGTCCGAGGTCTAGAAGCAGCGGTAGTCCCAGAACAAGTTCCATCGGTTCAATACAAACGACTGCTGTCGCACCATCCCCAGCCACCGAAATTCCTCTGAGATTAACTGACCTGCCGCCACCTCCTGTTCCAGGAGTGCTGGTGAAGCAGGGTGTTTCGAGATGCAAGGAATGCAACATCGTATTCTGCCGGCACGAGAACTTTGTCGCTCACAAGAAACACTACTGCCAATCGAGGGGGGAGACCACGGTAAGCAACAGTCCACCGCCATCCGGCACACCCTCGCCGCCACTGGTCCAGCTGATCTGCGCCGCTTGTGGCATCAAGTTCGCCTCTATGGACAACTTAGCTGCCCATCAAGCGTTCTACTGCCCCAAAAGGCCCGAGTCTCAGGAACATCACACACGTTGTTCCAAATGCAAGGCGATAATAGAGCCCGGAAGTAGCCATTCCTGTGCCAGCAGTGCTACAGGTGGCTGGAGATGTCCAGTCTGTGGCGCCGTTAGTCCAACGGCTGGCGCTGCTCAACGCCACATGGATGCCCATCAAGGCATCAAGGCCTTCCGATGCACTATCTGCCGTTACAAGGGCAACACCTTACGTGGCATGAGGACTCACATCAGAATGCACTTTGCGAAACGTGGCACCGACCTACAGGAGGAGAATTACATAACATGCGTGTTGGACGATGAAGCGACGTTACCAACGCCGGAACCGGCAGCCGCCACGACACCGGAAGAAATACCTGCGGAGGTGCAGGTGAACGGTAAAACCACAGACACAAGAAAGAGTCCACAACCGCCGCCGTCGTTACCGCCACCTGCGGCTGTTACCAGTAAGGTGAAGCAGGAACGCGAAGacacgccaccgccgccgccacctccaccTCCGGAGGAGAGTTTAGACCCCACTAAAAGCGGGCCTCGATATTGTCGATCTTGTGACATCAGTTTCAATTATTTGAGCACGTTCATCGCCCACAAGAAATTTTATTGTTCGAGTCATGCCGGTGAGGCcagcaacaacaataacaacaataataataataacaacgccaGCGGACATGCGACGTCGCCGCCGACCGGGAGGACCGAGGCGTCAGTACTCTAA
Protein Sequence: MRGVRSLTRVSSCDRIAPTRVSVLSVPRRRMLRIEKPGRTEYSMPGRYIIHFQGEDEEWSDSEKTPSVSSGVDGGGSAVSSPVAPVVEEDSSLPPPPRLNPVLSSVNSANEDLRIRLSVLPEETRKRLASLTEDIEVAKSIRSHAPSRSVRTRESSPKDVEEEQVVVKEEECQPRSSSSLSSSTRKRDAVCRRDSEDSARRSDESATEAKRMKPEDEAAPRLRLNASLATDPALRPAAVAALTVKPENTSPPNPTPPLPAGLQNAIASGRLFVLPTDGKETITVEPARPTALICPPCGIRFSSASTLEAHRTYYCAHRPRLEEDAANDEDDDKSGKYEVRKAYACPHCSYSADKKVSLNRHMRMHAASPAPPTIPPANPTPTNNPVAGQTTASNGSLNEEVEKYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDSVPTPATPQSSVKASPPTSSSPGDSPPPQPCLALPTNPPIVLPYTVFRGASVLAAPALPLPDTVYYLLPDGTLQPVTRGLPPATQNATMEPPAVLKAANKPSTPASVVTASTSPSVLAPLDLSVRRSPGHQDEKENRMSPAPSSLPPPPGSPRSRSSGSPRTSSIGSIQTTAVAPSPATEIPLRLTDLPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQSRGETTVSNSPPPSGTPSPPLVQLICAACGIKFASMDNLAAHQAFYCPKRPESQEHHTRCSKCKAIIEPGSSHSCASSATGGWRCPVCGAVSPTAGAAQRHMDAHQGIKAFRCTICRYKGNTLRGMRTHIRMHFAKRGTDLQEENYITCVLDDEATLPTPEPAAATTPEEIPAEVQVNGKTTDTRKSPQPPPSLPPPAAVTSKVKQEREDTPPPPPPPPPEESLDPTKSGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNNNASGHATSPPTGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00452813;
90% Identity: iTF_00769938;
80% Identity: -