Obru007783.1
Basic Information
- Insect
- Odontomachus brunneus
- Gene Symbol
- -
- Assembly
- GCA_010583005.1
- Location
- NW:2783728-2789239[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 0.77 9.7 0.2 6 21 271 286 268 287 0.91 2 12 0.0055 0.35 10.8 0.1 1 23 293 316 293 316 0.90 3 12 0.019 1.2 9.1 0.3 3 20 330 347 329 348 0.95 4 12 0.0014 0.087 12.7 0.7 2 23 364 385 363 385 0.97 5 12 8.6e-07 5.5e-05 22.8 0.9 2 23 429 450 428 450 0.97 6 12 0.041 2.6 8.0 0.3 1 23 455 477 455 477 0.95 7 12 0.77 49 4.0 1.3 2 23 540 561 540 561 0.97 8 12 7.8e-05 0.005 16.6 2.9 1 23 570 592 570 592 0.97 9 12 1.7e-05 0.0011 18.7 3.8 1 23 600 622 600 622 0.99 10 12 0.028 1.8 8.6 1.6 1 22 628 649 628 649 0.93 11 12 0.0066 0.42 10.6 0.0 1 23 759 782 759 782 0.98 12 12 5.2e-07 3.3e-05 23.5 5.5 1 23 787 810 787 810 0.98
Sequence Information
- Coding Sequence
- ATGGTCGACAAGTTTGGAGATGTGTGCAGGCTGTGTCTGGAGAAGAGGGACGAGATGATGCCGATCTTCGGCAACGAGAGCATGCAGCGCAAGGTGCCTCATAAGCTGCGCGGTTGCCTGCCAGTGTTGGTCTACCGAACCGACCCATTGCCGAAACAGATCTGCCAGTTTTGCGCGGCCAGGCTAGACGACGCTTACGAGTTCCGGGAGCGTTGTCTGGACGTCTTCAAGAAAATGTTCAACATACTACTCAAGTCCAAACAGACTGAATCGGTGCGGGTATTTTTGGACGCGATGACGAACTCACAAGACCCATGCCAGGCGCAACTGTACAAAAAAACATCCAGAGCACCACCGCCTTTGGTACCTTTGCCAAACTCACTGCCACTTGACAATTCATTGGCTCCAGTCAACCAGATTAGTCAAGACCAGCTACAGAACACCTGCATAGAGAGCCTGCCCGAATTACCGTGCGAGGTGGAGATCAAGGAAATGACTGCGGATACAAATCTGAATGACCAGATCGCTGCTTGTGAACCAGCGAGTAAAAGGCCCAAGTGGTTGGAGACATACAGCACAGGTATGCGAACAGCAACAAATACAGTTCCTACATTTGGCATGGAAGAGGAGCAGGCGTTCTCCAAGGCGGAATACCAAGCGAGAAAGGAGGAAAAACGCACGAGCATCTTGGAACAGGCGTTGACTGGTAATCTCACGTTGAACAATATGGCAAAGAACAATCTAACGGTGGGTCATCGACAGAGACTACACACCAAGGCGATGTTAACTTCTGAATGGTGGTGTGCGCCATGCAACAGATATTTCAAATCAAGGGAGAGTTTGGTGAAACACATGCAAGTGCTTTGTCCGCGGGAATTTACTTGCAAAAGATGCTCCATGTCCTTCGAATCCGTGGAGCTCTTGGCGAGACATGAAGCTGAAATTCATCTGGAAGTGAGATTGGGCTCAGTAGAAAACTTGAACGATTGCGACCAGTGTGATCGACAATTTCTAAACTGGAGCATGTTGAGACAGCACAGATTGTGCTATCATTTGGCCGAATTGTCTGAGTTTTTTGATGGAGATACACGGTGTTCATTATGCAATAGGTTCTTTCCTACTGTACGAGCTTATCAAGACCATATGCAGTTGCATCAAACGAACGACAACTTGGTATTACCACAAAGACCATTTTCTGCAGAGCCTACATTTCCATCAAAAGTAGCGGAACGAACGGGAGAAGTTAAAAGGATAGATCCATTCTACGAAAACGCGAAATCCCTCACGTGTCCTACATGCGGAAAAGTTTGCACAGCGCAAAGCGCGCTATCGAATCACATGCGCACTCATAAGCCGaagaaatataaatgcaatttttgcgGCCGATTGTTCGGGCTTCTTATACGGCTAGCGGCGCACAAAATGTCGCATGACAAGCAGGCGGAGGTATCGCCAGTAATGTCGGCAGTCGAGCAAGAAGAGGCATTAAACGCTGAGAGGGAAGCGAGGGAAGCGAGAGAAGCCAGAACTCGCGTCAATAAAAGATCCTTTTCTGAGATGATGGAGAATCGCGATACTTCACCGGAAGATGAGCCTGCTGAGTTTAAAAAGATAGCAAAATGCGGGATCTGCTCGCAATGGTTTGGCGACCATACGACGATGCTGACGCATCTCCAGACGCACTCGGACAATTACAATTGCAGGAACTTCACGTGCCATGTTTGTAAAAAATCGTTTAAAGAACAATGGCAGTTTGTCAGGCACGAAGCGAGTCATAAACGCGCCGATAAAGCCGCATACACTTGCAACAGTTGCAAGAAGTCCTTCATGGATAAGTCTCTGTACAAGGAACATCAGAAGACGCATATGGTGAAGCAAACATATCTCTGCGCGAAATGCAATAAGATCTTCTTCAAAGAAGTATCACTGCTCACTCATCAATGCACAGGCGCGTTAGAGAAGAGAGCCGCTGCGGAATCCGTGCAGAAAACGTCGACCCACGACAGCAATAAGAGACACAAACGGGACGCGTCCTTCTCGTCGCCGTTGCCGTTGCGAAACTCCCACATGAGGATGCACAACAACGACGCATACGGCAATAACATGACACAACAGCGTGAGATCAAAATCGAAACAGACGACGAGTCGATGCCAAAATTGAGTCCAGAGATCTTGGAGTACAGCGTGCCTCCCATCATTGAACCCAGAATCGAGATCAGCGAGCAAAGCGCGCCCCCGCCTTTCAAACGGACTCTCATCAAGACAACTAATGGATATCGGTGCGGCGTGTGTAAATCGCCGTTCGTGTCGAGGGATCTAGCTGTGGCGCATTTGAGGTCAGCGCATCCGGTAATGCCCTATCAGTGTCCTTATTGTAAAAAACGCTTTACGACGCAGTACATGTTCACTCATCATATCAAGACCGAGCACCCCGATGAACCCGAAAAATGA
- Protein Sequence
- MVDKFGDVCRLCLEKRDEMMPIFGNESMQRKVPHKLRGCLPVLVYRTDPLPKQICQFCAARLDDAYEFRERCLDVFKKMFNILLKSKQTESVRVFLDAMTNSQDPCQAQLYKKTSRAPPPLVPLPNSLPLDNSLAPVNQISQDQLQNTCIESLPELPCEVEIKEMTADTNLNDQIAACEPASKRPKWLETYSTGMRTATNTVPTFGMEEEQAFSKAEYQARKEEKRTSILEQALTGNLTLNNMAKNNLTVGHRQRLHTKAMLTSEWWCAPCNRYFKSRESLVKHMQVLCPREFTCKRCSMSFESVELLARHEAEIHLEVRLGSVENLNDCDQCDRQFLNWSMLRQHRLCYHLAELSEFFDGDTRCSLCNRFFPTVRAYQDHMQLHQTNDNLVLPQRPFSAEPTFPSKVAERTGEVKRIDPFYENAKSLTCPTCGKVCTAQSALSNHMRTHKPKKYKCNFCGRLFGLLIRLAAHKMSHDKQAEVSPVMSAVEQEEALNAEREAREAREARTRVNKRSFSEMMENRDTSPEDEPAEFKKIAKCGICSQWFGDHTTMLTHLQTHSDNYNCRNFTCHVCKKSFKEQWQFVRHEASHKRADKAAYTCNSCKKSFMDKSLYKEHQKTHMVKQTYLCAKCNKIFFKEVSLLTHQCTGALEKRAAAESVQKTSTHDSNKRHKRDASFSSPLPLRNSHMRMHNNDAYGNNMTQQREIKIETDDESMPKLSPEILEYSVPPIIEPRIEISEQSAPPPFKRTLIKTTNGYRCGVCKSPFVSRDLAVAHLRSAHPVMPYQCPYCKKRFTTQYMFTHHIKTEHPDEPEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00452750;
- 90% Identity
- -
- 80% Identity
- -