Basic Information

Insect: Odontomachus brunneus
Gene Symbol: -
Assembly: GCA_010583005.1
Location: NW:2381640-2385629[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0015 0.094 12.6 2.3 2 21 112 131 111 132 0.94

2 15 0.0042 0.27 11.2 0.6 2 23 137 158 136 158 0.97

3 15 0.013 0.8 9.7 1.2 1 23 164 187 164 187 0.97

4 15 2.5e-06 0.00016 21.3 3.5 2 23 194 216 193 216 0.93

5 15 2.8e-05 0.0018 18.0 2.7 2 23 224 246 223 246 0.97

6 15 0.0007 0.045 13.6 1.5 1 20 251 270 251 274 0.88

7 15 3.6 2.3e+02 2.0 0.1 2 9 277 284 276 298 0.82

8 15 0.0027 0.17 11.8 0.5 2 21 406 424 405 425 0.93

9 15 0.00038 0.024 14.5 0.9 1 23 428 451 428 451 0.97

10 15 0.0062 0.4 10.6 2.5 1 23 456 479 456 479 0.95

11 15 0.0057 0.36 10.8 0.7 2 23 512 534 511 534 0.95

12 15 0.0001 0.0067 16.2 0.2 1 23 539 561 539 561 0.96

13 15 0.014 0.88 9.5 6.2 2 23 568 588 567 588 0.97

14 15 1.3e-05 0.00084 19.1 0.9 1 23 594 616 594 616 0.97

15 15 7e-06 0.00045 19.9 1.3 1 23 622 644 622 644 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0015	0.094	12.6	2.3	2	21	112	131	111	132	0.94
2	15	0.0042	0.27	11.2	0.6	2	23	137	158	136	158	0.97
3	15	0.013	0.8	9.7	1.2	1	23	164	187	164	187	0.97
4	15	2.5e-06	0.00016	21.3	3.5	2	23	194	216	193	216	0.93
5	15	2.8e-05	0.0018	18.0	2.7	2	23	224	246	223	246	0.97
6	15	0.0007	0.045	13.6	1.5	1	20	251	270	251	274	0.88
7	15	3.6	2.3e+02	2.0	0.1	2	9	277	284	276	298	0.82
8	15	0.0027	0.17	11.8	0.5	2	21	406	424	405	425	0.93
9	15	0.00038	0.024	14.5	0.9	1	23	428	451	428	451	0.97
10	15	0.0062	0.4	10.6	2.5	1	23	456	479	456	479	0.95
11	15	0.0057	0.36	10.8	0.7	2	23	512	534	511	534	0.95
12	15	0.0001	0.0067	16.2	0.2	1	23	539	561	539	561	0.96
13	15	0.014	0.88	9.5	6.2	2	23	568	588	567	588	0.97
14	15	1.3e-05	0.00084	19.1	0.9	1	23	594	616	594	616	0.97
15	15	7e-06	0.00045	19.9	1.3	1	23	622	644	622	644	0.98

Sequence Information

Coding Sequence: ATGGTTGTGCATGACCCGCTAGAGGATCCTCTGTACTTTCCgtattatgaaaattttattggcaCATCTATTGATTCCCCGATCGTAACGGATGCTGATGACTCGAAATATAAGATCGAAATTGTTGAGAACTTCAATCTACAGGAAGAATTGAATCGCGATATAAAGAAAGACCATGAACTATCTGATAATTCCTATGACAATATGCTACCTCGTGAATCGATTCAGAACGTATCGCTTTCCGAAAATAGTAATACTTCGGTTACGGATCGTCCGGAAGCCTATGATGTCAACTCAGGGGTGATCGCCAGGGTGGAACCAGAGTTCTTTTCGAAGTGTACTGCATGCCACAAACGTTTCAGATACAAGGCCGACTTTGAGAAACACAGGAACTTGAATGATTGTCTGCAATGCGAAACTTGCTATCAGAAGTTCGACTTGTTAGAAGACTTCAGTCGTCACATTAAGATACATCGTAAATCTATGAGCTACGACTGCTACATGTGTTCCTACAAGACAGATACAGTGAAATATTTGACTGAACACATGAAATCGGAACATAACACCACCGATATATGCAAATGTGTCATATGCTCCAAAACATTCAGTCGACGGAGTAATCTTaagaaacataaagaaataGCTCACGCGGATAACACACAGTCGATAAAATGCGACAAGTGTGATGGCGTCTTCAAGAACAAATATTGCCTAAAGATCCACCAGCGCAGAATACACTCAGAggcaaattttttttgcaaaaggTGTGGATTTACCTTCAAAACGCAGGACGAACTGGACCAACATAATGCCGAGCGTCACGATTGGACCTGCCCGCAATGCAACAAAAAGATATTAGTATTCTCTAATATAGAACCACACTTGCGACTTCATAGGAATGAAAAACCTTTTATCTGCGACACTTGCGGCAACGCTGACCCACTGGTGGATCCTCTGTACATCCCGGATTCCAAAAGCGTTAATGATCAATCTATGGCTTCGCCGAGTGTTCCGGATGCCAACAATTTGGAATGTTCGTCCGTTGAAAATTCTGTCGACTCGTCTCTATATAAAAGTAAGCTTCGCAGAAGAAGAAAAACGACCCTCGCGTcgagaaaagaaagtcattgtCACGCGATGCAAGATTCTAGACGACATTCAAGAAGACAGAATGTCAAACGGAAGAAAATCAACGAGAAGATGAAGTCCTATTCGAAATGCGGCACATGCGGCAAGTGTTTCAGCTGGGATGCCATGGTAAAACACTTGAACGAGCCTAAGTATTCCTGTCAAAACTGCCGCCAGGTCTTCTGTGTGGAGGTACAGCTAAATCGTCACGTCGCAACGGTTCACGGAGAGCCCATATATTCCTGCAGTATTTGCGAATACAAAAGCAAGAACAAGCGCACCTTGACAGATCACTTTATACGAAAACACACGGAAGAAGATCAGTTTTCATGCAACAAACAATTGGCGATTCAGGATGGCCAGGAGCAGCAAGCAAATCGAGTACGTAGTGGCAAGTCGTCCATCACCTGCAGTATATGCGGCCACGTCAGCAAAAACGTACGTGCTATCAAAGCACATATGAAGTACCGTCACTACAAGCCGCAGTTTGTCTGCGAGATCTGCCGTCGTGGCTTGACTACGCAAAAGAACCTCGAGCAACACCTCGAATGGCACGAGACCAGGGAGAATAAGGAGTGTCCGACCTGCCACAAGAAGTGCCGTGTTCGCGACCTCAAACAACACATGCAAACTCACAGCGATGCGAAGCTGTTTTCCTGTCCCGTCTGTGACAAGACGTTCCGAGAGCAGTACTATCGGGAGCAACATATGTTGCTTCATACGGGCAAGAAACCTTACATATGCAGCATTTGCAACCTGACATTCACCCAGAAACGTCGTCTGATTGCTCATAGAAAAACTCATCCCGGGCCACTTCCTCCGCTACCGGTGGTTCCTGTCGAAAAAATCATTGCGGAATTCATGAAGaaatacacgaagaaaaatacaaTCAACAAAAATAACACCAAATAA
Protein Sequence: MVVHDPLEDPLYFPYYENFIGTSIDSPIVTDADDSKYKIEIVENFNLQEELNRDIKKDHELSDNSYDNMLPRESIQNVSLSENSNTSVTDRPEAYDVNSGVIARVEPEFFSKCTACHKRFRYKADFEKHRNLNDCLQCETCYQKFDLLEDFSRHIKIHRKSMSYDCYMCSYKTDTVKYLTEHMKSEHNTTDICKCVICSKTFSRRSNLKKHKEIAHADNTQSIKCDKCDGVFKNKYCLKIHQRRIHSEANFFCKRCGFTFKTQDELDQHNAERHDWTCPQCNKKILVFSNIEPHLRLHRNEKPFICDTCGNADPLVDPLYIPDSKSVNDQSMASPSVPDANNLECSSVENSVDSSLYKSKLRRRRKTTLASRKESHCHAMQDSRRHSRRQNVKRKKINEKMKSYSKCGTCGKCFSWDAMVKHLNEPKYSCQNCRQVFCVEVQLNRHVATVHGEPIYSCSICEYKSKNKRTLTDHFIRKHTEEDQFSCNKQLAIQDGQEQQANRVRSGKSSITCSICGHVSKNVRAIKAHMKYRHYKPQFVCEICRRGLTTQKNLEQHLEWHETRENKECPTCHKKCRVRDLKQHMQTHSDAKLFSCPVCDKTFREQYYREQHMLLHTGKKPYICSICNLTFTQKRRLIAHRKTHPGPLPPLPVVPVEKIIAEFMKKYTKKNTINKNNTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -