Obru003482.1
Basic Information
- Insect
- Odontomachus brunneus
- Gene Symbol
- -
- Assembly
- GCA_010583005.1
- Location
- NW:685511-695967[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.014 0.92 9.5 1.4 2 23 407 428 406 428 0.94 2 15 0.13 8.4 6.5 7.3 2 23 442 464 441 464 0.94 3 15 1.7e-05 0.0011 18.7 0.2 1 23 470 492 470 492 0.98 4 15 0.016 1 9.3 7.1 1 23 498 520 498 520 0.95 5 15 0.00011 0.007 16.2 4.5 1 23 529 551 529 551 0.96 6 15 0.0001 0.0066 16.2 3.6 1 23 557 579 557 579 0.98 7 15 1.2e-05 0.00076 19.2 0.4 1 23 584 606 584 606 0.98 8 15 0.0092 0.59 10.1 4.0 1 23 613 635 613 635 0.98 9 15 0.096 6.1 6.9 1.5 2 23 655 676 654 676 0.93 10 15 0.00075 0.048 13.5 0.5 2 23 684 706 683 706 0.96 11 15 0.0043 0.28 11.1 3.4 1 23 712 734 712 734 0.97 12 15 3.4e-05 0.0022 17.7 0.5 1 23 740 762 740 762 0.98 13 15 3.1e-06 0.0002 21.0 2.0 1 23 768 790 768 790 0.98 14 15 2.4e-07 1.6e-05 24.5 2.0 1 23 796 818 796 818 0.98 15 15 4.6e-05 0.0029 17.3 0.5 2 23 824 845 823 845 0.96
Sequence Information
- Coding Sequence
- ATGAGAATTGTTTGCGCAGcattaaattgtaaatattccTCGGAAAATGAAGATTCGTCAAGTGTCATTTTTACCCATTTTCCTGATGATGACACAGCTAAGGCATTAGCAGAAAAATGTGGCAGATCGGATTTAGCTGAAAAATCGAATGCGGAATTACACTTGAATTATTACGTTTGTTCTCATCACATAGAAGATCACTGTTACAGAAGCAAATCCGTTGTAGAACAAGGTGCTATTCCTACCCTATTTGGAACCCACATACGTACTGACAGTGAagattgtataaatatatttgacaaGCCACAACATCTTCAAGGAGTAGATGATAGTGTATCACTATCATATTGCAACatgaatgttgaaataaatgaatatcACGATATCACTATCAGATTTTCTAATTTATGTCGAATCTGTGGTGAGTCAGTTCTGAATGGGATAGATATTTTTTCAGCTAAGGGTATAGAACTTAgcttaaaagaaaagataagtTTGCACCTGCCCATTTCAATTGATATGAATGATTCAATGCCACAGAAAATATGTATTGATTGTTGCAACAAATTAGAGAATACACATTTGCTTGCTGTCTTGTGTTTAAAAACTGATATaaagttaaagaaatttttaaatattgatagagAGTCGGAATATGAAAATAAGTATAATGCATTAGTTGAGAAATGTTTATTGGAGACAGATAATATATGCCTGGATAACAGTATACATCCCGATTCTGTATCATTTACAATGAATAAGATAGCGAATCCTGATTTAGAAACAAGTTTAAAGGAGTTAGAGAATAGAGGAAATCCTGAAGCACAGAGTAATAGCTTTCAGAGCATCACCAAGATTGTTGAACAATCAGAAATCAATAATAGAATTCAAACTTATggagaatttaataataaaaataacggtAAATATGCCATGAAAGAAATATCGCAAACTCAACAAGACAAAATTCAGAATGGTAAACACGATATTTTATGTTCTCAATGCCAGACTCTTTACAAAACACAAGAAATATTTGAGGACcataaaatattctgtgttaAGAAAAAAGATTCTTCAAAGTGTACGTCTAAcacattacaaaataaaaagactAAGAATATTGAGTCAGAAACAGAAGGTTTTCAGTCAAACAACAAAGAACTTGAAAAGAAACAACTTACTGATAAACCTGAGATCTGTGAATCAGTGCATTCAATATATTGTCCAGTTTGCAGTCAGCTGTTTAAAACTCAACAGGATTTCGAAGAACACAAGCATCTACATGATAACTTTACTGAAAATGCTGCAATAGGAGTTAATAAAAGGTGTGGTCACTGTAAAGAATGCTATCAcagtaaaaaagatttattaaacCATATTACACAATCACACGAAGggcaattattatttcaatgctTCATGTGCGATAAGATGTACGAAAGATGGTCTGGTTTGGAAATTCATGAAGCTACTCACAGATTAGATAAACCATATCTTTGCGATTTGTGCGGTAAGAGTTTCAAGCATTCCAACTTTTTAAGATGTCACAAGAGAAGTCATTTAGACGAATCTAAAAAGAAAAGACACGTATGCGAAATTTGTGAAAAAGCATTTAGATCACGGTTTCATTTAAAAGAACATAAAAATCAACACGAGGGAAATAAACCATATACTTGCGAGCAATGTGGAAAAGCTTTCCATAAAAGGATGCAATTGCGACAACACAAATTATCGCACggattaaataaatacatatgttCGATTTGCAGCGCGACGTTCAATCGCAAAGGAAATATGAGTGCGCATATAAAACGGCACAACAACGAGAGTGAAGTGTATACATGTAGTGTCTGTGCCTATAAATGCAAATCCATGAGCGAATTGAAGATGCATAGAAAGAATCATACAGAAGAAGAAATAGTAGACAGTATTAAGAAGAAATCTACCGACAAGGAGATATGGCGATGTAACGTCTGCAACAAAGTATTCCTGAAGCATACCATCTTGATAAACCATGAGCGCACGCACAAAAACGACAAAACTTACGTGGAGTGCGACGAATGCGGCAAGAATTTGGCGAACAAGAACTCGCTGATGTATCACAAGAAGTCATTCCATCTGAAGGAAAAGCTGCACATGTGTCAGTATTGCGGACATTCGTTCGTTTCGAAAGAGGGGCGATTAATACATGAAAGAAAACATACCGGCGAGTGTCCCTACATCTGCCAGCTGTGCAACGCGAGATACAGGGGTTCGAGTAACCTTAGCCAGCACATGAAGATCCACACAGGTCACAAGCCGCACAAATGTAATTATTGTAACAAAGGATTCATACGCAAAAATGCGTTAACCGTGCACGAGAGGATTCACACAGGCGTCAAACCGTATCCTTGCGAAATTTGTGGTAGATGCTTCTCGCAGAAGAACGATATGTTGAAACACATCAAGACACACAACAGCAAATTGTTGCAATGCGACCAATGCAACGAGATTTTCAATCGGAAGAAAGATCTGTTGAAGCATACTGCGGTGCACGAGCAAGACACTTCGGCGGTTCCAAGCCATGTTGACACGCCGCCACATATCCTTCAACTTTACGCCAGCACGACTCCTCTCTGA
- Protein Sequence
- MRIVCAALNCKYSSENEDSSSVIFTHFPDDDTAKALAEKCGRSDLAEKSNAELHLNYYVCSHHIEDHCYRSKSVVEQGAIPTLFGTHIRTDSEDCINIFDKPQHLQGVDDSVSLSYCNMNVEINEYHDITIRFSNLCRICGESVLNGIDIFSAKGIELSLKEKISLHLPISIDMNDSMPQKICIDCCNKLENTHLLAVLCLKTDIKLKKFLNIDRESEYENKYNALVEKCLLETDNICLDNSIHPDSVSFTMNKIANPDLETSLKELENRGNPEAQSNSFQSITKIVEQSEINNRIQTYGEFNNKNNGKYAMKEISQTQQDKIQNGKHDILCSQCQTLYKTQEIFEDHKIFCVKKKDSSKCTSNTLQNKKTKNIESETEGFQSNNKELEKKQLTDKPEICESVHSIYCPVCSQLFKTQQDFEEHKHLHDNFTENAAIGVNKRCGHCKECYHSKKDLLNHITQSHEGQLLFQCFMCDKMYERWSGLEIHEATHRLDKPYLCDLCGKSFKHSNFLRCHKRSHLDESKKKRHVCEICEKAFRSRFHLKEHKNQHEGNKPYTCEQCGKAFHKRMQLRQHKLSHGLNKYICSICSATFNRKGNMSAHIKRHNNESEVYTCSVCAYKCKSMSELKMHRKNHTEEEIVDSIKKKSTDKEIWRCNVCNKVFLKHTILINHERTHKNDKTYVECDECGKNLANKNSLMYHKKSFHLKEKLHMCQYCGHSFVSKEGRLIHERKHTGECPYICQLCNARYRGSSNLSQHMKIHTGHKPHKCNYCNKGFIRKNALTVHERIHTGVKPYPCEICGRCFSQKNDMLKHIKTHNSKLLQCDQCNEIFNRKKDLLKHTAVHEQDTSAVPSHVDTPPHILQLYASTTPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01087277;
- 90% Identity
- iTF_01087277;
- 80% Identity
- iTF_01087277;