Obru008104.1
Basic Information
- Insect
- Odontomachus brunneus
- Gene Symbol
- -
- Assembly
- GCA_010583005.1
- Location
- NW:1799114-1804560[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.014 0.9 9.5 0.2 3 21 8 27 6 28 0.85 2 14 0.67 43 4.2 0.0 2 20 34 52 33 54 0.91 3 14 0.6 39 4.4 0.5 1 12 246 257 246 266 0.89 4 14 0.0019 0.12 12.2 3.6 1 23 380 402 380 402 0.97 5 14 7.8e-06 0.0005 19.8 0.3 2 23 406 427 406 427 0.98 6 14 0.005 0.32 10.9 4.5 1 23 438 460 438 460 0.97 7 14 0.00026 0.016 15.0 0.2 1 23 479 500 479 500 0.94 8 14 0.0012 0.076 12.9 0.0 2 23 506 527 505 527 0.95 9 14 3.9e-05 0.0025 17.6 4.8 1 23 605 627 605 627 0.99 10 14 1.7e-06 0.00011 21.8 3.7 1 23 633 655 633 655 0.96 11 14 4.2e-05 0.0027 17.5 5.5 1 23 661 683 661 683 0.99 12 14 1.2e-06 7.6e-05 22.3 0.8 1 23 689 711 689 711 0.98 13 14 0.00012 0.0075 16.0 0.3 1 23 715 737 715 737 0.99 14 14 0.00024 0.016 15.1 0.2 1 23 745 767 745 767 0.98
Sequence Information
- Coding Sequence
- ATGGGCTCATTAAATCTTGTATGCCCGATGTGTTGTGGCGAAACTTTCAACAACCCTCAATCCTTAAAGTACCATTTATTAAGTATAACAGACAATCTTTATTGTCCTGGCTGTTCGCAACGTTCTGATTCTGTGACGGCACTCATTCAACATTTAGACAAATGTCAACAAGGTTTGCAGCGCAAGATAAAACCTGAAGTCATAATGGACACAGCTCGAAAAGTTTGCAAGGAGTCAGAAAATAGAGCAAATATTTTAGCGGTTAGTACAGATAAGAGCAAGGATGTTAAGGTACAACAGATGAATCGAAGCTTTCTAGCAACTGTAAATGACACTGGAATTGTTATAGTTGGTGATCCGCAGACAATACAAGTAGATGAGAATGgAGAAATTAAAGTTATAGAAAAGCTGGACTTGGATGAAACGCAACCAGATCAAAATTCTCTGGATTTCAAAATGTCTGAAAGTTTTTGTGATATTAGTGGCGGAAAGCAAAGAAAACCACAATTATCTCAAGGATTAGTGGCTATACCTGTATCGAGTTGTGTTGCAGAATGCAAAGAGACATCACTAGATAAGAGTATGGTTGCTGTGTTATCAGAAAATTCCAAACTCTTGGATAGTGACGTTACAACCTTCATTGATGTAGATCGCATAAACGACGTAGGGGAATTTGATGAAGCTGGTCTTTTGCGTGTCAAACAGGAACTGTGCGGGATGGAGTCAGATGCTGTATACAGCTGTACCAGCTGTGACACGAGTTTTAATTCTGTCTTGGAGCATATTAAGCAATTTCACGACGGCCAAGAAGTCCTACTAGAAATGGCGGAGCAATTTGATGACCTGACGAAGACAGTACCTGTAAGTTCAATATCTACAGTACCTGAAAGCTCGGGAAATATGGTTAATACACGGCAAAGACAAACTATGAATACGCTGCGCACGGAGGAGTGCATCGACAGCGAAGGTAGGCTCTATACAAGGAAAGTAGTACAGATTGAGAGATTTTGGGACCAGATGCCAATTCAAGTCGCGACATCACAATCAGCGAAGGCTCCGATGATTGAGAAATTCTTCTCAAATGTGGAGGGCATTAAGGTACGGGAAAAACGCCTGGCGGCTGCACCATTGCGAATGTACAAGTGTAATCAATGCTCGCAACAGTTCTCGAAATTAGGAAACTTTCGAGTGCACGCCTGTTTACATGGTAACAATCGCTGCGAATATTGCGATCAAAGCTTCGCGACTCCTAAGGCCTTACAGCTTCATACGAAAGTACATGAAAATAAGGCCGATCCTAGccaaaaaacgtttatttgtaCAGCGTGTGGCACAGAGTTCTGTTCTCATAAAAGCTTGCGATTACATTCGAGAATGCACGCTCCTGTGAGGGCTAGGCACGTCGATGCACCCGAAGGAACTCCTTCAGCAACTTTTACTTGCCCCGAATGCGgtaaaattttttctgaatCTTACAAAAATGCACACATGGCGCTGCACACGGGCGATTCGGTAACGTGCGCTGTCTGTAACAGAAAATTTGATTCCTCGGACAGTTTAGCGATGCATGCAGCGGTGCACACTGAGCTGGTGCCTCCGCAGTCACCCACTTCATCCGTCTTGATTTCAGTCTCAACTGCTGGAGAAACAGCAGCAGTGACAACGACGACGTTAGTAACCACAACTACGACTACAGttacaacaataacaacaacaacaacaacaacgagaGCAATAgcaacaacgacggcgacgtcgaCTTTGACTACGACGGCTACGGTGACGGTAGAAGCTAGCGAAAGTCAAAAACCTTATCAATGTCAGCATTGTGGTCGTAGATTTACTAGACCTCACGAAAAAGTTAAGCATGAACGAATTCACACCGGAGAGAAGCCACACGCTTGTGAGGTTTGTGGCAAGACCTTTCGCGTATCTTACTGTCTGACCTTACACATGCGTACACACACGGGTGTGCGACCCTATACTTGTCAACACTGTGGGAAACGTTTTAAGGCCTCTTCCGTCTACAATCATCATATGTTGACGCACGGCGATGCGCGTGCCTACACTTGCCCGTACTGCCCGAAGACGTTCAAGACGCGAGTGCAACTTGCTGGCCACAAAAATAGTCACACAAAACCGTTTCGGTGCACCGAGTGCTCGCGACCATTCGCATCGCTCTATGCTGCTCGATCACATATTCAGACGCACAAGAAAGACAACAATCTCAAATATAGCTGTTACATATGTGGTGCATCGTATGGTCGAGCATTCGCCCTTAAGGATCACCTGAAGCAACACGGTCAAAACGTTCTAGCGCCGCCGGAGCCAGCGCGCGAGGAAGAAGTGCACGAGGGTTTCTTGCTCGGTGAGGAAGTATCTGATAGTGACAAACGCGTACATGCTCGCCTTGGAGTCCCGTCATCTACACTTCCTGTTGAGCCTACTTCTATGGACGATGTGGATACCGATTGA
- Protein Sequence
- MGSLNLVCPMCCGETFNNPQSLKYHLLSITDNLYCPGCSQRSDSVTALIQHLDKCQQGLQRKIKPEVIMDTARKVCKESENRANILAVSTDKSKDVKVQQMNRSFLATVNDTGIVIVGDPQTIQVDENGEIKVIEKLDLDETQPDQNSLDFKMSESFCDISGGKQRKPQLSQGLVAIPVSSCVAECKETSLDKSMVAVLSENSKLLDSDVTTFIDVDRINDVGEFDEAGLLRVKQELCGMESDAVYSCTSCDTSFNSVLEHIKQFHDGQEVLLEMAEQFDDLTKTVPVSSISTVPESSGNMVNTRQRQTMNTLRTEECIDSEGRLYTRKVVQIERFWDQMPIQVATSQSAKAPMIEKFFSNVEGIKVREKRLAAAPLRMYKCNQCSQQFSKLGNFRVHACLHGNNRCEYCDQSFATPKALQLHTKVHENKADPSQKTFICTACGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPSATFTCPECGKIFSESYKNAHMALHTGDSVTCAVCNRKFDSSDSLAMHAAVHTELVPPQSPTSSVLISVSTAGETAAVTTTTLVTTTTTTVTTITTTTTTTRAIATTTATSTLTTTATVTVEASESQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYTCQHCGKRFKASSVYNHHMLTHGDARAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARSHIQTHKKDNNLKYSCYICGASYGRAFALKDHLKQHGQNVLAPPEPAREEEVHEGFLLGEEVSDSDKRVHARLGVPSSTLPVEPTSMDDVDTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00452727;
- 90% Identity
- -
- 80% Identity
- -