Obru000997.1
Basic Information
- Insect
- Odontomachus brunneus
- Gene Symbol
- -
- Assembly
- GCA_010583005.1
- Location
- NW:370226-384324[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.011 0.7 9.9 0.3 1 23 222 245 222 245 0.95 2 18 1.9e-05 0.0012 18.6 4.7 1 23 250 272 250 272 0.98 3 18 2.3e-05 0.0015 18.3 1.0 1 23 278 300 278 300 0.97 4 18 0.0079 0.5 10.3 0.3 3 21 308 326 306 329 0.89 5 18 0.00016 0.01 15.6 1.6 1 23 335 357 335 357 0.95 6 18 0.00012 0.0074 16.1 2.2 1 23 363 385 363 385 0.98 7 18 0.00048 0.031 14.1 5.7 1 23 391 413 391 413 0.98 8 18 3.3e-06 0.00021 20.9 1.1 2 23 417 441 417 441 0.96 9 18 0.095 6.1 6.9 2.3 2 23 450 471 449 471 0.96 10 18 0.0075 0.48 10.4 0.3 1 23 954 977 954 977 0.95 11 18 1.8e-05 0.0012 18.6 2.7 1 23 982 1004 982 1004 0.99 12 18 8.3e-06 0.00053 19.7 1.2 1 23 1010 1032 1010 1032 0.97 13 18 0.0079 0.5 10.3 0.3 3 21 1040 1058 1038 1061 0.89 14 18 0.00016 0.01 15.6 1.6 1 23 1067 1089 1067 1089 0.95 15 18 0.00024 0.015 15.1 2.1 1 23 1095 1117 1095 1117 0.98 16 18 0.00048 0.031 14.1 5.7 1 23 1123 1145 1123 1145 0.98 17 18 1.2e-07 7.6e-06 25.5 0.8 1 23 1151 1173 1151 1173 0.98 18 18 0.0029 0.19 11.7 1.3 2 23 1182 1203 1181 1203 0.96
Sequence Information
- Coding Sequence
- ATGACACACACGTATAAAACGCCAATAGATATGGAGAGTAGGCCGGCACCGCTGCACTCGCAGCGGGTATGCCGATTTTGCCTGACAGAGTCGGAACCTTTGAAGTACATTTACGAGCCGGACCACAACAACCCGTCCCAAGTGCCACTGACGGTACAAATCAATTCATGCGTCGGCATCGAGGTGTCCGAAGCTGACGGAATGCCACAAATGATTTGTCTCATGTGCCACTGGAATCTGGACCGCTTTCACAAGTTCAGGCTGCAATGCAAGAGAGCTGACGAGGCATTAAGATATTACCCGTTGTCTGGGGTGCTACCTAGACCCTTTCCACCTATTTCCATCAATCCACCAGAGTTAAGCAGCAAGAAACCTGCTGAGACTGGACAACAACACAAAAGCACCAAAAAGCTGCGCACGGACAACACTGAAAGGGATAGATGCGTGACCAGAGAGAGGAAGCGCGAGcgggaaaaagaaagggaaagagacagagaccGAGTAAACGAGAATCAGCTGGATAAGTCTTCAAACAATTTCTATGAGCAATTTCATGATTTCTACGAGGAGGAGCAGGACGGCGTTAGCGAAGGTGAGGAGACTAAGAACATCGAACGTGTGAAAGAAGACAGCATGAAGTTGGAGCCAGGCGAGATCAGGGTGCACGCGTGCGACCAATGCGAACGAACGTTTCCGTTGCGCCAAGCTCTGTCGTTGCATGTTCAGACTGCACATCGTGAACGTAATCACAAGTGCACAGAATGCGAGCGTATGTTCTTTTCCAAGTACGATCTCAGCAAGCACATGAACACTCATTCGAAGGAGAAGCCGTTCGCGTGCCAGATCTGCCAGAAACAATTCTCTCGGCAGAACCTACTACTACGTCACGAGAAGGTTCATCGGGACGAAATGCGTTACGGATGTCCACACTGCGAACGCGAATTTTTCACTACGGAGGACTTGGAGAAGCACGAGGACGCGGCGCACAGAAAGGACAAGCcgtttcagtgcaatatttgcaataaacgTTTCCAGTACAAACAGGGCTTAGAGCGCCATGAGACGCTGCACAGCGAGGACAAGACATTTGTTTGCGAATACTGCAAGGAGGCATTTCACACCAGCACCAAATTGGCTCGTCATCTCTCCACTCACGCTGGCCACCGACCCTACATGTGCAAGCTCTGTCCAAGAACGTTCCTCTTGTCGCATCATCTCACGCGACACATGCGCACGCACTCTGTAGAAAAGTGCCATGTATACGAGGATTGCGGCAAAGCGTTCAAACGTAAAGAAAGTCTTGAAGTACATCAGCTGACTCACACTAAGCGTACTAGAATGGGTCTCATGTGTGACGTTTGCCAAGAATCTTGTCACAGTCGTGCTGATTACGTTACCCATATCAAGCAGCATATTGAAGCAGGCGAAAAGATGGGTCTAGACGGTTTGAAGGCGGACAACAAGTCCAAACTGGAGATGGActgggaagaagaagaagaagaggaagatcagtactcgaacggcgacgacgactaTAAGCCACCCGCTTATATCATCAAAAAATTGCCGAAGTCAACACCACGAAGAGACGACAGTAATGAAAAGGGGGACGAGGAAAAGGGGCAACAATGTAAAGAGCAGGTAGTATTTGTGCGCAAAAGGGACGGGAACATGATGAAGAAGACGATCAAGACGCTGATGCCAATCCAACAGCGCGAAATGCAGGAACAAAAGTCAGCCGCCAAGCAAAGTGGTTCGTCCACCTTTCAGAACGACACGAAAAACTTGTCAGCACAGAGCAAAGAAGAGAATTCCACGAGCGCACACCAGAACGATACCGAGGCGCCAATGCAGAAGATCGTCGCGTCGGTTGAGGAACACAAGATTCCGCTGAAGTACGAAAACGTCGCAGTGCAGGAACAGTCCAATGAGGAGTCATCGGCTACTATGACGAGCTCGGCCATCATTGCATCGCACGAAGCTTGCAAGGCAGATGTCAAGACTGAGATGAGCACAACAGAAATAGTAGCGACGGGAACAGGCGTGATGACGTTCATATCGATACTGGCGGAGTTGATCGCGTCGGAGTTTTCCCGGGGTTCAGCTCGATCGCACGCGTCCGTGGACGAGAGTAAAAGAGGAGATAGAAGAAAGGcgcggagaggagaggagaagagaggagtgGAGTGGAAAGGAAGAGAGCGAAGCCACAGCGCGACACACGCGTACAGAACGCCGGCGGATATGGAGAGTAGGCCGGCGCCGCTGCGCTCGCGGCGGGTATGCCGATTCTGCCTGACGGAATCAGAACCGCTGAATTACATCTACGAGCGGGATCACAACAAGCCCTTCCAGGTGCCACTTACACTACAAATCATGTCGTGCGTCGCCATCGAGGTGTACGCAGCTGACGGAATGCCACAAATGATTTGCTCCATGTGCCGCTGGAATCTGGACCGTTCCTACAAGTTCAAGCTGCAATGCAAGAAGGCTGACGAGGCATTGAGGGATTACCCGTTGTCTGGGGTGCTACCCAGACCTTTTCCGCCTATTCCCAACGACCCACCAGAAGTAAACATGAAAAGACCTGCTGAGGCGAGACAGCAACACGAGAACACCAAAAAGCCACGCACTGACAATACTGAAAGGGAGAGACGCGTAACCAGAGAGAGGGAGCGCGAgcgggagagagacagagaccgAGCAAACGAGAAGCAACGTGATAAGTCTTCAAACGAGCAACGCCATGATTTCTACGAGGAGGAGCAAGAAGACGGCGGTAGCGAAGGTGAGGAGACTAAGAACGTCGAACGTGTGAAAGAGGACAGCATGAAGCTGGAGCCAGGCGAGATCAGAGTGCACGCGTGCGACCAATGCGAACGAACGTTTCCGTTACGCCAAGCTCTGTCATTGCATATTCAGTCTGCACATCGCGAACGGAACTATAAGTGCACAGAATGCGAGCGTATGTTCTTTTCCAAGTATGACCTTAGCAAGCATTTGAGCACTCATTCGGAAGAGAAGCCATTCGCGTGCCAGATCTGTCAGAAGCAATTCTCTCGACAGAACTTGCTGCAACGCCACGAAAAGGTGCATCGAGACGAGACGCGTTACGGATGCCCGCATTGCGagcgcgaatttttcaccacGGAGGACCTGGAGAAGCACGAAGACGCGGCGCACAAAAAGGAGAAACCGTTTCAgtgtaatatttgcaataaacgTTTCCAGTACAAGCAAGGCTTAGAACGCCATGAGACGCTGCACAACGAGGACAAAACGTTTGTTTGCGAATATTGCAAGGAGGCGTTCCACACCAGCACCAAATTAGCGCGTCATCTCTCCTCTCACGCTGGCCATCGACCCTACATGTGCAAGCTTTGTCCAAGAACGTTCCTCTTGTCGCATCATCTGACGCGACATATGCGAACGCACTCAGTAGAAAAGCGCCATGTATGCGAGGACTGCGGCAAAGCGTTTAAACGTAAAGAAAGTCTTGAGGTACACCAGCTGACTCACACTAAGCGTACTGGAATGGGTCTTACGTGTGATGTTTGTCAAGAGTCTTGTCGCAATCGTGCCGACTACGTCACCCACATCAAGCAGCACATTGAAGCAGGCGAAAAGATGGGCCCGGACGGTTTGCAACCGGACAATAAGGCCAGGCCGGAGGCGGACtcggaagaagaggaagaagaagaggatcAGTACTCAGACGGTGACGACGATTATGAGCCGCCCGcttatattatcaagaaaatgccGAAGCCATCACCGCGGAAAGAGGACAGCgacgaagaggaggacgaggaagagGGGCAGCAACGTAAGGAGCAGGTAGTATTCGTGCGTGGAAAGGACGGGAACATGGTAAAGAAGACGATTAAGACGCTGATGCCAATTCAACGCCGCGAAATGCATGAACAAAAGTCCACGGCCAAGCAAAGTGGCTCGTCCACCTCCCAAAGCGGCACGAAAAACTCATCGGCACAAAGTAAAGAAGAAAATCCCAAGGGCACACGCTTGGACGATACCGAGGCGCAAGTACAAAAGATCGTCGCGTCAGTGTTTAAGGAGCACAAGATTCCGCTGAAGCACCAAAACGCCGCAGCGCAGGAACAGTCCAACAAGGAGTCATCGGCCACTGTGACGAGTTCGCAGGCCACCACTGCATCGCACGAGGCTCGCAAGGCAGACGACAAGACCGAGATGGGCACAGAAATAGTAGCGATGGGAACGGGCGTGATGACGCCTACATCCAAAAACGTCAAAGTCATTAAGAGGTTCGTCTTGAGGAAACCGGGTGGAAATATCGAAGGGACGCCCTCGAACATAAATACGAACATAAGTACACAAGAGATCTCTTCTACCTCGGTTGTGAGCAAccccagcagcagcagcagcactcCAATCCCCGGGACCAAGGTTAACAAGCGTTTGATAGTGCGCCGAATCATCCGCCACGGTGATACCACCCGCGAGGTAGTTATGAATCCAGACGGCACCGTCGTCGACCCAGCCGAATTGGCAAAATTGCCATCCGGAAATGTGGTGAAGCGAGTGGTGGTAAAGGCCAAAGGTCAGAACCTGGTACAGGCATTGCTGCATCGAGTGGAGCATCAGAAAGCCGGCGAGACCATCTTGGACGACACGATGACCAACAAGTTTGAGTTGAAGACCAGTCCGTCGTCGTCTAACGGCAATAGCTCTGTAGTGACAATAGCAGCCTCCGCCACGTCCACGCCCAAAAACACGATCACGTCTCCAAAGGCGACGAACCAACAACAATCAATTGTGCAAGAGGATCAGGAGACGAAGGAGAAGCTAGAACGACTGGAGAAGCGAGTAGAGCAGCAAAGACTGAAGATCGAAGAGCTGCAGGCGAGAAAACAGGAATACGAGGCAATTGATGATATGCTGCCAGAACGGCACGACGAATCCGAGGACGAGCAACAATTACCGCTGAAGAGGGTGTTCGTCAAACGGAAGCAAAGCATTTATGACGAGGAACAAGAGTACAACGATAATGACACAGAGATGACGACGGCCGCGAAACCGGTTGCCAAAAACGTGACCGAGCAATCTGTTGTTAATGAAGAAGACAAATCCATTGTGGAAGAAACGCCGGAGAATATCCAGAAAGAAATCCAAAACCAACAGAAAGAGATGAAGGCCGCCGCTTCTAGCAACGCAACTACTTCGACTTTGAAGAAAGGCCCAATCATCTCCAGCGACAAAGTTTACACAAACAGACGCTTCCTAATCATGAAGCCCGAACAGTCGAACGAGGTAGAGGAAATGAGTCGCGAGCTATGCAACATCCTGGAGACAACCGACAGTGTAGCGAAGATGCAGGAAACTGTATTAAGCAATCTCACGCAAATCTCCAGCACGGAGACGACGTTGTCGTTAAAAGCAAAGAGTGGCAATGACTCTTCTGCGGTGGAGACGGTCGAACAGCAGGTGGAAGCAATGGAAATTGATTGCGAGTCTGAACAGACTATCAAGCAGGAAACGATGATGGAGGTGGAGATCGCGAGCCAACAGACTGAGATCAAATTGACTTCCTCCGCGGGAGAAGCGGAAGACGTGAGACAAGAGGAAGAAGAGCTCAGTCAGGATGAAGACGACACGACTCCGCATTTGGTCCTTGACACCCCAGATCTTCCCGAGAGTGCTGACATCTTCGAGCCGTCAGACGACGTACTGGATGTGCAAAAGTCGACTACTCTCAACGAGTCCGTTATCGAACTATCGCAATCTAATGAAACTATCAATCTCAATGATACAAACGACAGTCAAGATAGTCTCGAGGACAAACTTTCGCAGATGGAGGGttaa
- Protein Sequence
- MTHTYKTPIDMESRPAPLHSQRVCRFCLTESEPLKYIYEPDHNNPSQVPLTVQINSCVGIEVSEADGMPQMICLMCHWNLDRFHKFRLQCKRADEALRYYPLSGVLPRPFPPISINPPELSSKKPAETGQQHKSTKKLRTDNTERDRCVTRERKREREKERERDRDRVNENQLDKSSNNFYEQFHDFYEEEQDGVSEGEETKNIERVKEDSMKLEPGEIRVHACDQCERTFPLRQALSLHVQTAHRERNHKCTECERMFFSKYDLSKHMNTHSKEKPFACQICQKQFSRQNLLLRHEKVHRDEMRYGCPHCEREFFTTEDLEKHEDAAHRKDKPFQCNICNKRFQYKQGLERHETLHSEDKTFVCEYCKEAFHTSTKLARHLSTHAGHRPYMCKLCPRTFLLSHHLTRHMRTHSVEKCHVYEDCGKAFKRKESLEVHQLTHTKRTRMGLMCDVCQESCHSRADYVTHIKQHIEAGEKMGLDGLKADNKSKLEMDWEEEEEEEDQYSNGDDDYKPPAYIIKKLPKSTPRRDDSNEKGDEEKGQQCKEQVVFVRKRDGNMMKKTIKTLMPIQQREMQEQKSAAKQSGSSTFQNDTKNLSAQSKEENSTSAHQNDTEAPMQKIVASVEEHKIPLKYENVAVQEQSNEESSATMTSSAIIASHEACKADVKTEMSTTEIVATGTGVMTFISILAELIASEFSRGSARSHASVDESKRGDRRKARRGEEKRGVEWKGRERSHSATHAYRTPADMESRPAPLRSRRVCRFCLTESEPLNYIYERDHNKPFQVPLTLQIMSCVAIEVYAADGMPQMICSMCRWNLDRSYKFKLQCKKADEALRDYPLSGVLPRPFPPIPNDPPEVNMKRPAEARQQHENTKKPRTDNTERERRVTRERERERERDRDRANEKQRDKSSNEQRHDFYEEEQEDGGSEGEETKNVERVKEDSMKLEPGEIRVHACDQCERTFPLRQALSLHIQSAHRERNYKCTECERMFFSKYDLSKHLSTHSEEKPFACQICQKQFSRQNLLQRHEKVHRDETRYGCPHCEREFFTTEDLEKHEDAAHKKEKPFQCNICNKRFQYKQGLERHETLHNEDKTFVCEYCKEAFHTSTKLARHLSSHAGHRPYMCKLCPRTFLLSHHLTRHMRTHSVEKRHVCEDCGKAFKRKESLEVHQLTHTKRTGMGLTCDVCQESCRNRADYVTHIKQHIEAGEKMGPDGLQPDNKARPEADSEEEEEEEDQYSDGDDDYEPPAYIIKKMPKPSPRKEDSDEEEDEEEGQQRKEQVVFVRGKDGNMVKKTIKTLMPIQRREMHEQKSTAKQSGSSTSQSGTKNSSAQSKEENPKGTRLDDTEAQVQKIVASVFKEHKIPLKHQNAAAQEQSNKESSATVTSSQATTASHEARKADDKTEMGTEIVAMGTGVMTPTSKNVKVIKRFVLRKPGGNIEGTPSNINTNISTQEISSTSVVSNPSSSSSTPIPGTKVNKRLIVRRIIRHGDTTREVVMNPDGTVVDPAELAKLPSGNVVKRVVVKAKGQNLVQALLHRVEHQKAGETILDDTMTNKFELKTSPSSSNGNSSVVTIAASATSTPKNTITSPKATNQQQSIVQEDQETKEKLERLEKRVEQQRLKIEELQARKQEYEAIDDMLPERHDESEDEQQLPLKRVFVKRKQSIYDEEQEYNDNDTEMTTAAKPVAKNVTEQSVVNEEDKSIVEETPENIQKEIQNQQKEMKAAASSNATTSTLKKGPIISSDKVYTNRRFLIMKPEQSNEVEEMSRELCNILETTDSVAKMQETVLSNLTQISSTETTLSLKAKSGNDSSAVETVEQQVEAMEIDCESEQTIKQETMMEVEIASQQTEIKLTSSAGEAEDVRQEEEELSQDEDDTTPHLVLDTPDLPESADIFEPSDDVLDVQKSTTLNESVIELSQSNETINLNDTNDSQDSLEDKLSQMEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -