Obru009118.1
Basic Information
- Insect
- Odontomachus brunneus
- Gene Symbol
- -
- Assembly
- GCA_010583005.1
- Location
- NW:2334408-2341847[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0022 0.14 12.1 0.1 2 20 75 93 74 95 0.92 2 22 0.0033 0.21 11.5 0.4 2 19 100 117 99 118 0.96 3 22 0.051 3.2 7.8 0.7 2 23 126 148 125 148 0.96 4 22 0.0007 0.045 13.6 0.8 2 23 157 179 156 179 0.96 5 22 0.00047 0.03 14.1 4.7 1 23 186 208 186 208 0.99 6 22 0.0012 0.074 12.9 0.7 2 20 216 234 215 236 0.93 7 22 0.016 1 9.4 0.2 2 21 241 260 240 261 0.92 8 22 0.0018 0.12 12.3 4.1 1 23 267 290 267 290 0.98 9 22 0.00036 0.023 14.5 0.5 3 23 300 321 298 321 0.96 10 22 1.3e-05 0.00085 19.0 2.5 2 23 329 350 328 350 0.97 11 22 0.00017 0.011 15.6 0.7 2 20 359 377 358 379 0.94 12 22 0.016 1 9.4 0.1 2 19 384 401 383 402 0.95 13 22 0.071 4.5 7.3 1.2 2 23 410 432 409 432 0.96 14 22 4.2e-05 0.0027 17.5 2.2 2 23 441 463 440 463 0.95 15 22 6.8e-05 0.0043 16.8 0.1 2 20 469 487 468 489 0.94 16 22 0.0041 0.26 11.2 0.3 2 21 494 513 493 514 0.93 17 22 1.3 83 3.3 5.6 1 23 520 543 520 543 0.98 18 22 2.3e-05 0.0015 18.3 0.7 3 23 553 574 551 574 0.96 19 22 1.3e-05 0.00085 19.0 2.5 2 23 582 603 581 603 0.97 20 22 1.3e-05 0.00085 19.0 0.4 2 20 612 630 611 632 0.94 21 22 0.013 0.81 9.6 0.2 2 20 637 655 636 657 0.92 22 22 1.1 71 3.5 0.9 2 23 663 685 662 685 0.94
Sequence Information
- Coding Sequence
- atgtttgaaattaTAGAGGACATCATCCTTCGGGAAAAATTGAATGCTCATGCAAAGAATGTCGATGAACTATCTTGTGGTTCCTACGATAGTGTGTTACCTCGTGAATCGATTCAGAACATATCAATTTCCAAAAATAGTAATACTTCGGTTACGGATCGTCTCGAAGCCTATGATGTCAACTCAGAAATGATCGCCTCGATGGAGCAGAAGAACTCTTGGCCCTGCTCTGCATGCGGCAAAACTTTCATGTACAAGATATCCCTTTTGAAACATATAAGCTTGAATAATTGCCTGCAATGCAAAATTTGCAACCAGAAATTTAACGTGTTAGAAGAATTTAAACGTCACGGTTGGACGTGTCGTAGACGTCTGACGTGCCGCAAGTGTTCCTTCAAGGCAAGTACATTGGAGGATATGAATGAACACATGAAATCGGTACACAATACTATCGACGTTTTACCGATACGTTGTGACATATGCTTCAAGGATTTTTCGAGGCAGGATATTCTGGAGAGACATAAGGAAACACGTCATGTGGATAACATACAATCGTTCAAATGTGACAAATGTGATTGCATCTTGAAGAACAAACGTACCCTACAGATGCACTTAAGAAGACACACAAAGGCGAACACTTTGATGAAATGTTTTGCATGCGGCAGAAATTTCAAAAACAAGGTTCTTTTCAAGAAACACATAAGCTTGAATAATTGCATGCAATGCCAAATTTGCGACCAGAAGTTTGACgtgttagaaaaatttattcgtcaCTCTAAAATGTGTACTAAAACTGAGTATACCTGTCGCGAGTGTTCTTACAAGACAGATACAAAGAACTGTTTGATTAAACATATGAAATCAGTACACAATGCTATTGACGTTTTACCGATATTTTGTGACATATGCATCATGAGTTTTGAGAGGCAGAAAAGTCTTAAGAGACATCAGGAAACAGTTCATGCGGAAAACATACAATCGTTAAAATGTGACAAGTGTGGTCTCACCTTGAAGAACAAATATACCCTTCAGAAACACTTAAAAAAACACACGCCAGAGGTGGACACGTTGATGAAATGTCCTACATGCCGCAGAAGTTTCAAATACAAGGTTTCCTTCGAGAAACACATAAGTTTGAATAATTGCCTACAATGCAAAATTTGCGATCAGGACTTTGATgtgttagaagaatttaatcGTCACGGTTGGACGTGTCGTACACGTCTGACGTGCCGCAAGTGTTCCTTCAAGGGAAGTACATTGAAGGATATGAATGAACACATGAAATCGGTACACAATACTATCGACGTTTTACCGATATCTTGTAATATATGCTTAAAGAATTTTCCGAGGCAGCAGCATCTGAAGAGACATAAGGAAACAGTTCATGTGGACACGTTGATAAAATGTCCTGCATGCGGCAGAAATTTCAAAAACAAGGTTCTCCTCGAGAAACACATAAGCTTGAATAATTGCCTGCAATGCCAAATTTGCGACCAGAAGTTTGACgtgttagaaaaatttattcgtcaCTATAAAATGTGTACTAAAACTGAGTATACCTGTCGCGAGTGTGCTTACAAGACACATTCAAAGAACTGTTTTATTACACACATTAAATCAGTACACAATACTATCGACGTTTTACCGATATTTTGTGATATATGCTCCATGAGTTTTGAGAGTCAGAGAAATCTTAAGAGACATAAGGAAACAGTTCATGCGGAAAACATACAATCGTTAAAATGTGACAAGTGTGGTCTCACCTTGAAGAACAAATATACCCTTCAGAAACACTTAAAAAAACACACGCCAGAGGTGGACACGTTGATGAAATGTCCTACATGCGGCAGAAGTTTCAAATACAAAGTTTCCTTCGAGAAACACATAAGTTTGAATAATTGCCAGCAATGCAAAATTTGCGAACAGAAGTTTGACgtgttagaagaatttaatcGTCACGGTTTGACGTATCGTAGACGTCTGACGTGCCGCAAGTGTTCCTTCAAGGCAAGTACATTGAAAGATATGAGTGAACACGTGAAATCGGTACACAATTTGCCACCAGAAGTTTGA
- Protein Sequence
- MFEIIEDIILREKLNAHAKNVDELSCGSYDSVLPRESIQNISISKNSNTSVTDRLEAYDVNSEMIASMEQKNSWPCSACGKTFMYKISLLKHISLNNCLQCKICNQKFNVLEEFKRHGWTCRRRLTCRKCSFKASTLEDMNEHMKSVHNTIDVLPIRCDICFKDFSRQDILERHKETRHVDNIQSFKCDKCDCILKNKRTLQMHLRRHTKANTLMKCFACGRNFKNKVLFKKHISLNNCMQCQICDQKFDVLEKFIRHSKMCTKTEYTCRECSYKTDTKNCLIKHMKSVHNAIDVLPIFCDICIMSFERQKSLKRHQETVHAENIQSLKCDKCGLTLKNKYTLQKHLKKHTPEVDTLMKCPTCRRSFKYKVSFEKHISLNNCLQCKICDQDFDVLEEFNRHGWTCRTRLTCRKCSFKGSTLKDMNEHMKSVHNTIDVLPISCNICLKNFPRQQHLKRHKETVHVDTLIKCPACGRNFKNKVLLEKHISLNNCLQCQICDQKFDVLEKFIRHYKMCTKTEYTCRECAYKTHSKNCFITHIKSVHNTIDVLPIFCDICSMSFESQRNLKRHKETVHAENIQSLKCDKCGLTLKNKYTLQKHLKKHTPEVDTLMKCPTCGRSFKYKVSFEKHISLNNCQQCKICEQKFDVLEEFNRHGLTYRRRLTCRKCSFKASTLKDMSEHVKSVHNLPPEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -