Obru006979.1
Basic Information
- Insect
- Odontomachus brunneus
- Gene Symbol
- bab1
- Assembly
- GCA_010583005.1
- Location
- NW:2836618-2839365[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00011 0.16 11.1 0.0 7 43 196 232 193 233 0.79 2 4 1.9e-11 2.7e-08 32.7 0.0 3 39 241 276 240 282 0.92 3 4 0.0017 2.5 7.3 0.0 19 34 308 323 296 329 0.76 4 4 1.2e-09 1.7e-06 27.0 0.0 4 38 354 388 351 393 0.91
Sequence Information
- Coding Sequence
- ATGACAAATATACCCGAACAACATGAGATCGGTCAGAATTATTGCTTCAGATGGAACGATTATCAGAATCATCTGTCTGATGTGGTACAACAGCTCTTGGAGGAGGATTGTATGGTGGACGTCACCATATACGCAGCTGGCTACCGTGTTCATGCGCATCGCATCGTGTTATGCGCCTGCAGCActttgcttcaaGAGATCTTTAGCCAAGTGACGGACGATCATCCGACTATCATTTTGAGTGATGTATCTCCTCAGgatttaaaatcaattattgaATTTGCATACCATGGGGAGATCCGAATTCCTGTAGAAAATATCAGTAGTTTGCTCGACGCCGCACGGTCATTAAAAATAAGCGGCCTCATCGAAATTGAAGGACTCGATGAAAACGAAGATGCTGCGAACGCAGAGAACAGTGGTGTTGATGAGCATATAACTGAAATGGAAGAAAATGCAGTTGCTTCTTTGGAGAAAGACTTGCAAGACCAACAGGAAAAAGCTACTGCTAAGAATAATACTTCAAAGAAAAAAGGACGCCGTCGTGAATTCTTCAGGAAAGAGTACAGTGATATCATGTTGACATCTGCAATTGATGACTTAAAATCGGGACAAACGTTAGTAGAAGCTGCTACTAAAAACAAAGTACCACGTTCAACATTGTACATGCGGGCAAAATCATTAGGTATCCATTTAAGTGGGAGAAATGAGTATCCTGCAGAAAATATGAAAGCAGCAATAACTGCTGTGAAgaatggttcaAGTTTGCAGCATGCATCAGATTTGTACAAAATACCCAAAACTGTGTTGTGGAGGCGTATGCAGAAAGAGGGTCATCCAGTCTTGCGTGCTGAAACTAGGAGATCATATGGTTTGGACAAGAGAGAGGCTGCTGTGAAGGCCTTAGAAAGAGGGGAGAATCTGTCGAAAGTTGCATCAAAATTCAAAATACCAAAGACTACATTATTCAGGGATAAGACACGATTAGTAGACCAGGGCAAATTACCATTGTCATTTTGGAAGAAACGCAAGATTGAGAATGAGGAACTGAAAAAATCGCGATTAGAAGAAGCAGTAGCCGCTTGTAAGGGCGGTAGGATGTCGCAAGCTGTTGCATCCATGACTTATCATATTCCAAAAACAACAATATGGCGAAAGCTTCAACAGGATGGAAAGAAAACTGAGAAAGTATCGAAAGTAAAGAATGAACGGCTCAATACATCGCAACAAGATTCTGAGATAAAAACGGAGGAAAATTCCAATTATAGTTATTGTGAGGTTTCATCGGAAATTCCCATCGCTTACATAGACGAGGAAAATATACCAGAAGATTCCGTGATAATTTTAACGACGGAGGAAATAGATGAACTGAATTTGGAAGAAGGCAGACAAATTATTGTAAATCCGGAAACTGGACAGGGCTACATTCCGTGCTCAATAAGTGTCGACGGAAGCGCAAACTACTCACAAGCTGAGAGTTAA
- Protein Sequence
- MTNIPEQHEIGQNYCFRWNDYQNHLSDVVQQLLEEDCMVDVTIYAAGYRVHAHRIVLCACSTLLQEIFSQVTDDHPTIILSDVSPQDLKSIIEFAYHGEIRIPVENISSLLDAARSLKISGLIEIEGLDENEDAANAENSGVDEHITEMEENAVASLEKDLQDQQEKATAKNNTSKKKGRRREFFRKEYSDIMLTSAIDDLKSGQTLVEAATKNKVPRSTLYMRAKSLGIHLSGRNEYPAENMKAAITAVKNGSSLQHASDLYKIPKTVLWRRMQKEGHPVLRAETRRSYGLDKREAAVKALERGENLSKVASKFKIPKTTLFRDKTRLVDQGKLPLSFWKKRKIENEELKKSRLEEAVAACKGGRMSQAVASMTYHIPKTTIWRKLQQDGKKTEKVSKVKNERLNTSQQDSEIKTEENSNYSYCEVSSEIPIAYIDEENIPEDSVIILTTEEIDELNLEEGRQIIVNPETGQGYIPCSISVDGSANYSQAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01087329;
- 90% Identity
- iTF_01087329;
- 80% Identity
- iTF_01087329;