Oalb033124.1
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- -
- Assembly
- GCA_949825065.1
- Location
- OX463866.1:18873339-18875468[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.7 5.2e+02 2.4 0.9 6 23 240 257 240 257 0.97 2 13 0.00086 0.067 14.7 1.6 1 23 263 285 263 285 0.98 3 13 0.00095 0.074 14.5 1.0 2 23 294 315 293 315 0.97 4 13 1.9 1.5e+02 4.1 0.2 3 23 407 430 405 430 0.83 5 13 6.1 4.7e+02 2.6 0.6 6 23 439 456 439 456 0.96 6 13 0.00065 0.05 15.1 0.9 1 23 462 484 462 484 0.96 7 13 0.00076 0.059 14.8 0.3 2 23 493 514 492 514 0.96 8 13 0.0041 0.32 12.5 1.6 1 23 523 546 523 546 0.96 9 13 0.013 1 10.9 4.8 1 23 551 573 551 573 0.96 10 13 2.8e-05 0.0021 19.4 0.2 2 23 585 606 584 606 0.97 11 13 0.026 2 10.0 1.8 2 23 611 633 610 633 0.95 12 13 0.00057 0.044 15.2 2.2 1 23 639 661 639 661 0.96 13 13 0.0012 0.091 14.2 2.5 1 23 667 690 667 690 0.97
Sequence Information
- Coding Sequence
- ATGGCTTCGGCGAAGTGCCGACTGTGTTTATACACACAAACTGAAACGGTGAATATATTTTCGTCTAAAGATCAAGCGAATTctcattgtattttaataaacaaattattctcGGTGCAAATCAAGAGTAACGATGATTTGACGCTGATCTGTTTGGACTGCGATAAAAGTTTGAAGgagtgttatatattttacgaTAAAGTACAAAAGGCTCAAACAGAATTGTTGGAAATAAACGACGATATCATTCCATTAGAGTCGATCAAGGTGGAACATGATCCGACGAATTTCGTCGACCCAGATTCCGTCGAAGTGAAAGATTTCTCcgataatttcaatttaaaagatgAATTCAGAGATATAGACGAATTTTCCGAAGATAATTGCGATGTTTCCGAATTAATTAAGACAGATAACGAGAAATCAGACGATGAATATGGAAAAACTGTCTATAAAAGTAAAAGGAAATCTAAAAGGATTATTCTCAAAGATGCTTCGCAATTGGAGGAAATTGTAAGTAATATTGTGGATTCGCATACGGTAATGAATAAAGATGGACTGTTTACTGTTAAAGGAAGTGCTTTGGAAGAATTAGCTAATAAATTCTATAAATTAATATGCGACATATGTAAAGATTCTAGTGTAGTATATGAAACTGTGAAAAATTTATTCGACCATTATGATATTCAACATAATATCAAAGGATACGTAAAGTGCTGTAACAAAAAATTcgatatgaaaagaaaaattaattatcatttagCCAAACATTTACAACCATCGGCTTTTCAATGTCATATTTGTAACAAAGTTATGTCAAGACCGGGAGAATTAAAGTTCCATCTCCAAACTCATTTACCCGAGTCTCAACGTCCATTGAAGTGTCAGTCTTGCAACAAAGGTTTCGTTTATCCGTCAAGATTCAAAGAACATCTCTTAACACATGGACCGATCAAGGAAGAAATCATTTTCGAAGATGAAAAAGGAGAGAGCGATCCGGAATACAGGCcagaagttaaaaaaaagagaaagtcTAGAGAAACGAGAGGGGAGAAAGATAAAACGAAATCGCCGAAGAAACCTAaagttaaaaaagaaatttcgCGACCGTCTGGTAATACAGTTTGCGATCCGAGTACGCTTATCAATAAAGACGGTGTTTTTGTTATCAAGGGACACGCTTTAGAAAAAATGCTcgatgatttttataatttatattgcgaATTGTGTTTAGAACCaaagaaatttaaaactattaaagATTTATTCGATCATTACGAGTCGGAACATCAAACAAGAGGTTACGTTACTTGTTGTAATACCAAACTCGATAGAAGAAAGAATATCAACTATCATATGGCGAAACATATTCAACCTTCGGCGTTCGAGTGTCATATTTGTAAGAAAACAGTCTCTCGTCCTGGGGAACTTAAATTTCACGTTCAGATACATCTTCCGGAGTCACAGAAACCTCTGCAGTGCGAAGAATGCGGAAAAGGGTTTGTATATccgtcgatatttaaaaaacacaaattatcgCATATACCCGTTGAGAAACGAAGCATTTATCAATGTAAATTTTGTACGAAATCTTTTAATTTAGCGACGACTTTTGCCGTTCACGTATCGTCCAAGCATTCTGGTCCTAAATACTTATGTTCCCACTGTGGGATGACTATAAGAGGGAAATTACATTATCGAAATCACATGAAGACCCACGAACCTTTAAAAACTCGTGAATTAGATAAAGTTGAATGCAAAGAATGCGGTATAGTCATAGCGAATAAAACTGGTCTTCGTAAACATATGAGAAGGCACGCGATAActttatattgtaaacaatgTGATTACGTTGCTCATAGTAATTTCCAACTTAAGAAGCACGTTATGATACGGCACACAGATATTAAACCTCACGTCTGCGTGATTTGCGGGAAGGACTTTAAGTTGAAACATTCGATGAAAGTACACATGGCGCAACACACTGGCGAAAGAAATTACTCTTGTCCGTACTGTTCGAGGACTTTTGTGGACCCGGCCAATTGTTATTCGCACCAGAAGAAGATGCATCCGATAGAATTAAAGAATAATCCGAGAAGAAAAGGGAGGCCGATAGCACAGGACAGTTGA
- Protein Sequence
- MASAKCRLCLYTQTETVNIFSSKDQANSHCILINKLFSVQIKSNDDLTLICLDCDKSLKECYIFYDKVQKAQTELLEINDDIIPLESIKVEHDPTNFVDPDSVEVKDFSDNFNLKDEFRDIDEFSEDNCDVSELIKTDNEKSDDEYGKTVYKSKRKSKRIILKDASQLEEIVSNIVDSHTVMNKDGLFTVKGSALEELANKFYKLICDICKDSSVVYETVKNLFDHYDIQHNIKGYVKCCNKKFDMKRKINYHLAKHLQPSAFQCHICNKVMSRPGELKFHLQTHLPESQRPLKCQSCNKGFVYPSRFKEHLLTHGPIKEEIIFEDEKGESDPEYRPEVKKKRKSRETRGEKDKTKSPKKPKVKKEISRPSGNTVCDPSTLINKDGVFVIKGHALEKMLDDFYNLYCELCLEPKKFKTIKDLFDHYESEHQTRGYVTCCNTKLDRRKNINYHMAKHIQPSAFECHICKKTVSRPGELKFHVQIHLPESQKPLQCEECGKGFVYPSIFKKHKLSHIPVEKRSIYQCKFCTKSFNLATTFAVHVSSKHSGPKYLCSHCGMTIRGKLHYRNHMKTHEPLKTRELDKVECKECGIVIANKTGLRKHMRRHAITLYCKQCDYVAHSNFQLKKHVMIRHTDIKPHVCVICGKDFKLKHSMKVHMAQHTGERNYSCPYCSRTFVDPANCYSHQKKMHPIELKNNPRRKGRPIAQDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -