Oalb031633.2
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- -
- Assembly
- GCA_949825065.1
- Location
- OX463864.1:6335696-6354410[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.074 5.8 8.6 1.6 1 23 246 268 246 268 0.98 2 10 0.0005 0.039 15.4 0.0 1 23 274 296 274 296 0.96 3 10 0.54 42 5.9 2.0 3 23 304 326 302 326 0.90 4 10 0.0024 0.19 13.3 0.3 1 23 332 354 332 354 0.98 5 10 4.7e-06 0.00036 21.8 4.0 1 23 360 383 360 383 0.98 6 10 0.0002 0.015 16.7 3.7 1 23 394 417 394 417 0.96 7 10 0.0016 0.12 13.9 2.3 3 23 428 448 427 448 0.99 8 10 0.00025 0.019 16.4 3.6 1 23 454 476 454 476 0.96 9 10 3.7e-06 0.00029 22.1 2.9 1 23 482 504 482 504 0.97 10 10 0.0011 0.083 14.4 0.1 1 22 510 531 510 531 0.97
Sequence Information
- Coding Sequence
- ATGCAGAAAGTCAGTGAAATCatagAACCGAGCTTATTAGAAACAGTAGAATCAAATAAGATAATAGAAACACAAAcaaaagaagtaaatgtaaaaattaaggAAGAATTGGACGTAGATTTTTATAATGACGAATTGCAAATAGAAAATAACGACAATGCAGAACCGTATAGTTCCGATGACGACTTAACTTTGAACAAAATTGTAGatgtgaaaaatttaaaattgaaaatatccaGTAGTCGTGTTACGGATATTTATGCGAAAAAGAGAAAagctaaaaaaaagaaaaaggaaggtaAAGATGTATTGCACGAAAAGAGATCCAGAGGTCGACCGAAAGGGTCGACGAATAAGAAGGATAAAGAAAAGAAGGTCAAAGTGGAAGattataatttagaaaatgATGCCGTGAGAGTAATGCTAGAGACAGATGGAGATAAGTGGTTTTATCCGAAAGGAACCGCTGAAGAAGTGAAGAAATGGCAGTGTTTAATGTGTCTAGTTTATAAACAATCTAGGATGGAGTTGCTGCAGCATTATAAAGATCACGTTGAGAAACCTTGGAAATGCACCAAACTGGTTGAGAATGGTATCAAAGAGGAAGAACtgatagatataaaaaaagatgtGGAGGATGATGACAACAGAAAGAGTGAGAAGACGGAGGCGGCCGCTAAGTTTGGAGTGCACTACACCATTGTTAAGTCTCCGGAATTCCATGACAAACCagCGTACCAGTGTCTCAGATGCCTGAAGATGTTCTTGAATAAGAGATCTGTGACAAGGCACCTCATTAGCCACGATGACTCCAGACCATTCCCGTGTAATATTTGTGGACGTGCCTACAAAAGAGCGTACGAAATCCTACTTCACGGGCGAGCTCACAACGGAGTCAAGACCCTTTTCTGTCGATATGAGCAGTGTAACTACAGCACTGTCTACCGCGGAGCTCTCTCCTCACATCACAAGAGGCACGAACCCAATTTCAAGTACACATGTGAAGTCTGCCAGAAAGGTTTCGACGTGCTGACCTGgttcaatgaacacaaaaacGTCCACACCGGTTCTAAACCGTTCACTTGTCACCTGTGTGGGAAAAGCTTTGTATATTCCagATATCTTACGTCTCATAGGAAAACGGTACATCCGGAGACGGAAAATGGCCGCGTGCTACTCCACCGCTGTCCGTCCTGCCCGAAGCAGTTCCCGCACCGCAAGACACTCCGGGCGCACCAGTCCCGAGAGCATGGAGCTCAGCAGAGCAACTCTTCCGTGCTGTGCGACATATGCGGCAAGGGGCTGAGCTCGAAGGAACACCTCAAGTTCCATCGGAGGACGCACACGGGGGAGAAGCCTCACGCTTGCAGgaCCTGTGGAAAAGCATTCGTGAAGAAATGCAACCTGACCCTGCACGAGAGGGTGCACAGTGGAGAAAAGCCCCATGTCTGCTCGCACTGCGGGAAGGCCTTCTCCCAGAGGTCCACCCTGGTCATACACGAGAGATACCATTCCGGAGCTCGCCCATACCAGTGTTTAATCTGCAACAAAGGCTTCGTGGCTAAAGGTCTATTGTCCATGCATCAGAAGACCTGCATATGA
- Protein Sequence
- MQKVSEIIEPSLLETVESNKIIETQTKEVNVKIKEELDVDFYNDELQIENNDNAEPYSSDDDLTLNKIVDVKNLKLKISSSRVTDIYAKKRKAKKKKKEGKDVLHEKRSRGRPKGSTNKKDKEKKVKVEDYNLENDAVRVMLETDGDKWFYPKGTAEEVKKWQCLMCLVYKQSRMELLQHYKDHVEKPWKCTKLVENGIKEEELIDIKKDVEDDDNRKSEKTEAAAKFGVHYTIVKSPEFHDKPAYQCLRCLKMFLNKRSVTRHLISHDDSRPFPCNICGRAYKRAYEILLHGRAHNGVKTLFCRYEQCNYSTVYRGALSSHHKRHEPNFKYTCEVCQKGFDVLTWFNEHKNVHTGSKPFTCHLCGKSFVYSRYLTSHRKTVHPETENGRVLLHRCPSCPKQFPHRKTLRAHQSREHGAQQSNSSVLCDICGKGLSSKEHLKFHRRTHTGEKPHACRTCGKAFVKKCNLTLHERVHSGEKPHVCSHCGKAFSQRSTLVIHERYHSGARPYQCLICNKGFVAKGLLSMHQKTCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -