Oalb024334.1
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- -
- Assembly
- GCA_949825065.1
- Location
- OX463855.1:38690531-38693173[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.7e-05 0.0044 18.4 1.5 1 23 127 150 127 150 0.97 2 17 0.89 69 5.2 0.2 1 13 178 190 178 192 0.90 3 17 0.071 5.6 8.6 1.3 1 23 298 321 298 321 0.92 4 17 0.015 1.2 10.8 7.1 1 23 367 390 367 390 0.95 5 17 2.5 2e+02 3.8 3.6 1 23 402 425 402 425 0.93 6 17 0.0012 0.094 14.2 0.3 2 23 430 452 429 452 0.96 7 17 0.85 66 5.2 4.3 1 19 458 476 458 480 0.91 8 17 0.13 9.8 7.9 4.3 3 23 488 508 487 508 0.97 9 17 7.2e-07 5.6e-05 24.3 1.2 1 23 519 542 519 542 0.96 10 17 0.0003 0.023 16.1 0.7 1 23 578 600 578 600 0.97 11 17 0.00019 0.015 16.7 1.3 1 23 606 629 606 629 0.96 12 17 0.05 3.9 9.1 0.1 2 23 635 657 634 657 0.94 13 17 0.0005 0.039 15.4 0.1 1 23 672 695 672 695 0.98 14 17 0.0014 0.11 14.0 0.7 2 23 702 723 701 723 0.97 15 17 4.8e-05 0.0037 18.6 1.8 2 23 731 753 730 753 0.95 16 17 0.0004 0.031 15.7 0.4 1 23 759 781 759 781 0.98 17 17 0.019 1.5 10.5 5.0 1 23 787 809 787 809 0.96
Sequence Information
- Coding Sequence
- ATGTCTTGCCCACTTTCCAGATACCAAGAATGTGGAAGACACTCAGTGAGAGTCAAGACGGAGGCAACATTCGAGATTGAGGAAACTGACAATAATGCGTCCGCTGACAACACTAGTACAGGAAAGACTACCGATGCCGTCAAGCAGGAACAGGCTCCCCACACTGACCTCATTGTCTGTAATCTAACGAGCCAACAGCTCAAGGATCATTTTCACAGAAAGGAAAAGGCCTATTCTTGTCACCTCTGCATCGATGAATTTGTCggttcaaaacattttttggcaCACATTGCGAGTTGTTCGGAGACAGTTTGTAAGAAATGTCGTGGAAAATTTTCAATGGAGAATTTATTATCGCACGAAGATTCCTGctcaatattttattgcaacCGTTGCCCAAAAAGATTCATAAGTTCGGAAACTCTAAAAATCCATCAACTGTCTAAACATGATCCTATTgtttgcgagtattgttgctcTAATTTCCCGACCGATGCCGAGTGTGAAACGCATAAAACCAAAGCACACCACTTTACGTGTGAAGTTTGTCTCAAGACATTTGAAAACTCTGTTGGGGCTCTCAAATATAGATTCGAAAAGAGCAATGATAAGGTTTTATGTTCACTTTGTTACGAATCCATCCAGTGTCAGCgatcaaaaatacttaaaaaaattaacaaatcacCTACCAAAGTTCAAGATACTGAAAAGCCAAAGCCAAAGGTTGAACATGATGTGAAAGAAGAGAATTGTTTAATTGTGCCCGATAATGTATCTCAGAAAAGCATCAAGTTTGATGTTAGGAATATAAAGAAGCCTGTTTTGATGGAAGATGACATTTACGTTCTACCCACTGAAGAGAACATGACAACAGATAACGCAAAAGTAGTATATGTGTGCTTTTATTGTCAAACTACTTTCAGTACCTTTCCTATTTTGAATGATCATTTAAAAGATAAACACAATATTGAACTTCAAGAATTTTCAGCTCTCGAAGAGGAGAAACCTTATCAAGATGCTCTGGAGAAGTACGAAGCTAAAATCGATGAACTGTTTGATACAGCAGTTCCGCTAGCGGACTTTCAGGCTCAGCCTCAGTACAAATGTTTGATTTGCGATAAATCTTATTGTTCTTTCAGCACTTACTGTAAACATGTGTTTCGAGCACATAAAATTAACGTACTTTTGAGCTCTGGCGTCAAATATCGTTGTTACGAATGTCGAACAGACAGAAACAATTTGAAGGATTTGAATAATCATTTGTATCATAGACATGAAACCATTCTCAATTGTGAATATTGTGAGAAAATATTCGCATCCAGAAAGGATAGGAAAATTCACATATTGACAGATCATCCGGATCAACCCGCTTTCACATGTATAGATTGTTCTTTGAAATTCTCGACGCATGACGATTTGAAACAACATTGCTCTTGGCACTGGTTCCACGAAATTGTGGATTGTaagatttgtaataaaaaaattaaaggtaaaaagaaatttaaagtgCATATGCATTATCATAAAATCCGTATCAGTGAAAGTGGCGTAGACTTTTCTTGTCCGGAGTGTGGCAAAACCCTCTCTTCTAAGTCAAGTTTGCATGCGCACATGCGCTTTGTCCATCAAGGAGGTCAACACGAAAACATCCTTTGCGGAGAGTGCGGTATTCTCGTCAATGCCAGGAGGTTCAGTCGCCACCATGACCGAATGCACAGTAAGGGGAGAATATATCGTTGTCTAATATGTCCCAGAGCATTCTTCTCTAAAGAGCTTCTGCGCCAGCATTCGGATACACACGTCGAAGGGCGACCCCACGAGTGTGACCAATGTCCCGCTGCATTTAAACAACTGAGAAATTTGCGCGTACATACACGAAACTTTCATTCTGAACCGTCGACTACTTGTAAACTTTGCGATTTAGAATTCGATGATGCTGAAGCGTATGCTGAACATCGCCAACTTAATCACAAACGACATGTCAAGTTTGTCAAACTTGACTCTGAAGAAGGCTTCCAATGTTCCGTGTGTCCCAAGATTCTAAAAAGCTCTCGCGCTGTGGCCACGCACATGCGCATAGCACACGAACAACATCTTCACGTGTCATGTAATCAATGTTCtcaaaaatttccttttgtacGACAACTCCAAAACCATATGGCCACTCATAACGAACCTAAACCAGATCTCAGCTGTAGTTTCTGTCACAAAACATTTACAACATTGGGCTCCTTGAACAGCCATATAAAATGGGTACACATCGGAGAAAGAAATTTTCCGTGCACTTATTGTCCAGCCAAATTCAAGAGGAAAGATGCTCAGGTGGTGCACGAGCGCACGCATACTGACGAGCGCCCTTACAGCTGCAATATCTGTCAGCGGCGTTTCCGTCAACGTACCGATTGCAAGCGTCACGAAGCCAAGCATAGTGTACCGGGTTTTCGCTACAACAAGCCGCACCGGTCCAGACCCCCGCGTGGTCCACTGCCCGGCCACTCCTCCAACGAGGTGGTCATCGAAGAGGTGGTAGAAGGAGAGGCGATCAACACCGCAGATGCCTCCGATACTCTCATGCTGCTCGAAGTCCCTACTCAGGAAGACCAACAAGCGGCTGCTTTTCTAAGTTATATCGTGCAGAATTAG
- Protein Sequence
- MSCPLSRYQECGRHSVRVKTEATFEIEETDNNASADNTSTGKTTDAVKQEQAPHTDLIVCNLTSQQLKDHFHRKEKAYSCHLCIDEFVGSKHFLAHIASCSETVCKKCRGKFSMENLLSHEDSCSIFYCNRCPKRFISSETLKIHQLSKHDPIVCEYCCSNFPTDAECETHKTKAHHFTCEVCLKTFENSVGALKYRFEKSNDKVLCSLCYESIQCQRSKILKKINKSPTKVQDTEKPKPKVEHDVKEENCLIVPDNVSQKSIKFDVRNIKKPVLMEDDIYVLPTEENMTTDNAKVVYVCFYCQTTFSTFPILNDHLKDKHNIELQEFSALEEEKPYQDALEKYEAKIDELFDTAVPLADFQAQPQYKCLICDKSYCSFSTYCKHVFRAHKINVLLSSGVKYRCYECRTDRNNLKDLNNHLYHRHETILNCEYCEKIFASRKDRKIHILTDHPDQPAFTCIDCSLKFSTHDDLKQHCSWHWFHEIVDCKICNKKIKGKKKFKVHMHYHKIRISESGVDFSCPECGKTLSSKSSLHAHMRFVHQGGQHENILCGECGILVNARRFSRHHDRMHSKGRIYRCLICPRAFFSKELLRQHSDTHVEGRPHECDQCPAAFKQLRNLRVHTRNFHSEPSTTCKLCDLEFDDAEAYAEHRQLNHKRHVKFVKLDSEEGFQCSVCPKILKSSRAVATHMRIAHEQHLHVSCNQCSQKFPFVRQLQNHMATHNEPKPDLSCSFCHKTFTTLGSLNSHIKWVHIGERNFPCTYCPAKFKRKDAQVVHERTHTDERPYSCNICQRRFRQRTDCKRHEAKHSVPGFRYNKPHRSRPPRGPLPGHSSNEVVIEEVVEGEAINTADASDTLMLLEVPTQEDQQAAAFLSYIVQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -