Oalb034623.1
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- -
- Assembly
- GCA_949825065.1
- Location
- OX463868.1:13527810-13531555[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.6 2.8e+02 3.3 0.8 1 20 309 328 309 330 0.84 2 15 0.00044 0.035 15.6 3.3 2 23 372 393 371 393 0.96 3 15 0.062 4.8 8.8 1.3 1 23 433 455 433 455 0.96 4 15 0.00021 0.017 16.6 0.3 1 23 472 494 472 494 0.99 5 15 0.00013 0.01 17.2 0.3 2 23 500 521 499 521 0.95 6 15 4.6e-06 0.00036 21.8 3.7 1 23 527 549 527 549 0.98 7 15 0.012 0.96 11.0 1.3 1 23 570 592 570 592 0.97 8 15 2e-05 0.0015 19.8 0.2 1 23 622 644 622 644 0.98 9 15 0.0071 0.55 11.8 4.5 4 23 650 671 648 671 0.89 10 15 0.15 12 7.6 0.7 2 23 678 700 677 700 0.95 11 15 0.00074 0.058 14.9 1.6 1 23 706 729 706 729 0.97 12 15 0.016 1.2 10.7 2.6 2 23 735 756 734 756 0.97 13 15 0.00068 0.053 15.0 8.6 1 23 762 784 762 784 0.98 14 15 0.03 2.3 9.8 0.7 1 23 789 811 789 811 0.97 15 15 0.0014 0.11 14.0 1.3 1 23 817 839 817 839 0.97
Sequence Information
- Coding Sequence
- ATGTCTAAAAACGTCTCTCAAGGCATGACCGAGCGATATATCAACAGACAAAATGACCGTCACAACATTGAGAAACCGAAAATTGAGGCAATAGACAATTTCGGTTATGGTTTGGAAACGGGAGATCTTAATATGAACGTTAATTCGTTTGAATTCATAATAGTAAATGATTTGATGGTCGACGGTAATATGGGATTGCAACACGGTCAAAAAATTAACTATCCGCAAAGTATTGTTAATATTGAAACCGGAATGAAAATTGACAAAGACACGGATAAAATATATCCCGGAATGTCGGATCAACAGAGGATATACCATGAAAGGATGGAACCGCCGAGAAATTACAATGAAGCAATGGATATAGCGAGATATGGCGGAATGGAATCTAAATTAATCGTACCGGAAATTATTGAATCTGATAGAATGTATTCTGCGATCGCTGAACCGACAATCAATTATTCCAACGGAATGGAACAGAACAAGTGTCCCGATATGATGGAGCCTAAGATTTTGTATCACGAACCACGTATGGAACCTAAAGTCATGTATTCAGAACCTGATAAAATGTGTATCGATAAAGTGGAACCGCAAAAAGATTACGTTGATTTAATTCAAATGCAGAATTCGTCCGTGACGGAACAGTTTATGTATTCGAACAATAATCAAATTGGTAAGACATACTCGAATATGACGGATCAAAATCATTTTGGTACGGGTATGGAAATCAATGCCGTCTGTTCGGAAGGGATCAAACCTGGTACGAATGTAGATGTTACCAAAATGGAAGAAACTCAGAAGGAATCGTCCACGAAGGAAGAACTCACAGTCGCGAAATCGGAACCGATTCGTACACAACTCGCGGAGAAGATTCTTCCGAAGCAGTCATCAAACTCAGagGACTGTTTGAAGGATTTCGAAATAACGTACAATTGCAAGTATTGCCGATTGCCGTTCGGTAATGTTGCCGCACTACCACATCACCACAAGTTCTGCAAAGGTGACAGGACACTCAAGATATACAGTCCCAACACGAAAGAAAAAACGCGTGGAAAGAGAAAAACCCAAGAGAAGGATTCAAAAACGCCGGGCGAAAACGAAAACACATCAGATTTATCGTGTAAATTTTGTAGTCAGACATTCCCACACCAGAGCTATCTTAAAAATCATCTCCTTTATCACGAAAcgcaaaaaaacttcaaaagtgACGTGGAAAAATCCACCAAGGGAACTAGCATGGACGATATTAACGGGAAATCAGTCGGTCCAACGGAAGACGCTAATTCGGTTAAGATAATATTCCACTGTGAACTTTGTAATATGTCGTTCGAAGCATTCAGCGATTTCGTTAAACACGAATCAATTCACTTGAACAAGACTGAACAGGCGAGCGAACCGATGATAGTTAACGATTCGTTCAAATGTGAGAATTGCGACGAGTTATTCGATAACGAGACAGATCTTTCGCAGCATATTCTTACGCACGAGAGTGATGCGTTGGAATGTGCCGTATGCAacaaggtttttaaaaaaataagcacttTGAAAAAACACGAACTCGTTCATTTAGACTTGAACAATTTCTCGTGCGACACTTGCGGGGAAAAGTTTAAATCGAAATCAACGCTCGAAACTCATATGTGTTCGCATTCAGTATCTACTATGACGGAGGAAGAGAATGTCGTCGAAAATAGTTCACAGCGAACGGCTCACGTGTGCGGCACGTGCGGTGTTTTGTTTGAACATTTATCCGAGTTGAAAATGCACGAAACGACGCACGAATTGGACGAAATTGTCGAAGACGCTAATACGACGTTAAGTAAAAATTTTGACAATAACGCGGTGTTACACGGTACCGCGGATTCTTTCGAATGTCAGATTTGTAACGTTTCGTTTGTTAATCCGTTTTTACTTCGTGAACACGTTCGAATGCATACAATGGAGAATTGTTTTAAGTGTTTCTGCGGAAAGACTTTTCGGAACTTAGTCAGTTTGAAAATGCACAAACAGACGCATGTTGACGGAGAAGATCTAAATTGTTTCAAATGCGCGCTACAATTTTCCAGTTTCGAAGCGTTGATCGAACACAAGAAAACTACGCATGTTGACGAAGAGGAATTTACGTGTTTACATTGTGACGAACAGTTTCCTAACGCGGAGACGCTGctccaacataaaaaaatgtaccataGGATAAAAGGATCAAAATGTAACATTTGCAAACGCGTTTATTTAACAAAGACCGCACTTATGAAACATTGGCATACGCATTTCAAAGATACGCCGCACCGTTGCGAATTTTGCGGGAAATGCTTCAAACTGTCCGGATGTTTGAAAATGCACCTTCGAACGCATACGAACGAGATGTTCTCGTGCAATTTGTGCAGCTATAAAGGTGTCAGCGAAAGCCAATTGAAATTGCACTACACGATTCATAGTGGGATGAAACGGTTCGCGTGCCAATTTTGTTCGTACGCTTCGATCACGAAGAAACAACTTAGAAGACATATTCTTAGACATAATGAGAATGCATTATAA
- Protein Sequence
- MSKNVSQGMTERYINRQNDRHNIEKPKIEAIDNFGYGLETGDLNMNVNSFEFIIVNDLMVDGNMGLQHGQKINYPQSIVNIETGMKIDKDTDKIYPGMSDQQRIYHERMEPPRNYNEAMDIARYGGMESKLIVPEIIESDRMYSAIAEPTINYSNGMEQNKCPDMMEPKILYHEPRMEPKVMYSEPDKMCIDKVEPQKDYVDLIQMQNSSVTEQFMYSNNNQIGKTYSNMTDQNHFGTGMEINAVCSEGIKPGTNVDVTKMEETQKESSTKEELTVAKSEPIRTQLAEKILPKQSSNSEDCLKDFEITYNCKYCRLPFGNVAALPHHHKFCKGDRTLKIYSPNTKEKTRGKRKTQEKDSKTPGENENTSDLSCKFCSQTFPHQSYLKNHLLYHETQKNFKSDVEKSTKGTSMDDINGKSVGPTEDANSVKIIFHCELCNMSFEAFSDFVKHESIHLNKTEQASEPMIVNDSFKCENCDELFDNETDLSQHILTHESDALECAVCNKVFKKISTLKKHELVHLDLNNFSCDTCGEKFKSKSTLETHMCSHSVSTMTEEENVVENSSQRTAHVCGTCGVLFEHLSELKMHETTHELDEIVEDANTTLSKNFDNNAVLHGTADSFECQICNVSFVNPFLLREHVRMHTMENCFKCFCGKTFRNLVSLKMHKQTHVDGEDLNCFKCALQFSSFEALIEHKKTTHVDEEEFTCLHCDEQFPNAETLLQHKKMYHRIKGSKCNICKRVYLTKTALMKHWHTHFKDTPHRCEFCGKCFKLSGCLKMHLRTHTNEMFSCNLCSYKGVSESQLKLHYTIHSGMKRFACQFCSYASITKKQLRRHILRHNENAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -