Oalb021070.1
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- pol
- Assembly
- GCA_949825065.1
- Location
- OX463852.1:37780762-37803562[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.016 1.3 10.6 1.1 10 23 67 80 60 80 0.92 2 9 2.7e-05 0.0021 19.4 2.5 1 23 86 108 86 108 0.99 3 9 5.5e-06 0.00043 21.6 0.4 3 23 116 136 114 136 0.96 4 9 5.2e-06 0.0004 21.7 1.3 1 23 142 164 142 164 0.96 5 9 0.00017 0.013 16.9 0.4 1 23 170 192 170 192 0.98 6 9 0.00083 0.065 14.7 0.4 1 23 198 220 198 220 0.97 7 9 5e-05 0.0039 18.6 4.1 1 23 226 248 226 248 0.98 8 9 3.8e-06 0.00029 22.1 1.5 1 23 254 276 254 276 0.99 9 9 2e-05 0.0015 19.8 0.3 2 23 351 372 350 372 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCTTTTACAGAAGATAAACCTGATCCGAATTCAATTTGTAGGACTTGCATGGATCGGAATAATAATCGgcctatttttttcacaaattttgtaACCGCTCCTATAATTGTCGAAATGTTGATGTCTTGTACAACTTTACAGGTTCAAAATAACGATGGCCTACCAGAACAAGTATGTGAAACTTGTGTAATATTCaaaaaatcaagtcaccttaagagACACGAACGAACTCACGAAGACAACAGGCCTTTCAAGTGCACCCAGTGTACCAAATCCTTTACTCTGGAAAGGCAACTAACAGAGCACATCAACAAGCATAAGGGTGTCAAGCCTCATCTTTGTCCTGTTTGCAGTAAAGCCTTTGCTCAGACCAGTACATTGAATGCCCATCTGCGAGTTCACACTCGAGAGAAGCCCTATCTTTGTGCAACTTGTGGTAAGCGCTTCGACAGCAGCACCAACCTCAATCAACACCTGAAACGGCACCGTGGGGAGAAGACCTTCTACTGCACCCTTTGCCCTGGCAGATACGTCAGTAAAGgTGAACTACAATCACATATGTCAACGCACACGGGGGCTCGGCCATTTGTTTGTGACACGTGTGGATCGGCCTTCACCAAGACCAACTCCCTGGCCAAGCACAAACTAATCCATCTAGGAATTAAACCCCACGAGTGTGACGTATGCGCTATGAGGTTCAACAGCAAAGACCATCTGAAACGACACTACCGAATCCACACTGGAGaaaaaccatacaaatgtgaattCTGTGAGCGCGCGTTCACGCAGAGCAACGATTTAGTTAAGCACACACGCTCACATCTTGGAAACAAAGATCCCCTTGCGGAAGAAGAATTGCTTAAAATATTAGAGAATTATGACAATAGTGAAGATGAGTTGGACAATGATTCAGATGATGACTACAATTACAATGAAGGAGATATTTTGGAAAAGCGTGACGTTACATTTGAATACATTGATGAAGAAAATGTTTCTCCTAATGAACCTATGCCATCTACGAGTTCATCTATGGACACTAATACAGAaTGTTCCATTTGTCCTGAAAGTTTCAGACTTAAAACAGAATTACGCAAGCACATCTCCATACACTTTTTGGGTACCAAGCCTGTGTCTCACGCATCTGAACCTATCATCTCAGAACAAATGACTATCATCCCAGAACCTCTCCTCTCAGAATCCATCCAATCTACCGACACCATGGACAGAGAACTGAAACAGGAGCCAGATGGAGTGGTGGAGAACAAGTTCATATTAAACACGGCCCTCCATCTGGCTAGAAGGAATCATAAGTCCCTGTATATGGCGTCCTTGGACCTCTCGAAGGCATTTGACAGTGTATCGCACGACGTGATTGTTCAGGTTCTGGAGGCGTACGGGGCCCCTGAaaaatttgtacaatatataaggAGAGTTTACGCGGCGGCGGAGACTAGAATCGTCTCCGGCGGCCAGTCTCGAGAATCATTAGGTTGA
- Protein Sequence
- MEAFTEDKPDPNSICRTCMDRNNNRPIFFTNFVTAPIIVEMLMSCTTLQVQNNDGLPEQVCETCVIFKKSSHLKRHERTHEDNRPFKCTQCTKSFTLERQLTEHINKHKGVKPHLCPVCSKAFAQTSTLNAHLRVHTREKPYLCATCGKRFDSSTNLNQHLKRHRGEKTFYCTLCPGRYVSKGELQSHMSTHTGARPFVCDTCGSAFTKTNSLAKHKLIHLGIKPHECDVCAMRFNSKDHLKRHYRIHTGEKPYKCEFCERAFTQSNDLVKHTRSHLGNKDPLAEEELLKILENYDNSEDELDNDSDDDYNYNEGDILEKRDVTFEYIDEENVSPNEPMPSTSSSMDTNTECSICPESFRLKTELRKHISIHFLGTKPVSHASEPIISEQMTIIPEPLLSESIQSTDTMDRELKQEPDGVVENKFILNTALHLARRNHKSLYMASLDLSKAFDSVSHDVIVQVLEAYGAPEKFVQYIRRVYAAAETRIVSGGQSRESLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -