Oalb020761.1
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- -
- Assembly
- GCA_949825065.1
- Location
- OX463852.1:20343469-20344890[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.34 27 6.5 0.8 1 23 163 186 163 186 0.97 2 11 7.9e-08 6.1e-06 27.4 2.4 1 23 195 217 195 217 0.98 3 11 0.0011 0.088 14.3 2.2 1 21 223 243 223 245 0.94 4 11 3.1e-06 0.00024 22.4 1.6 1 23 251 273 251 273 0.98 5 11 9.1e-05 0.0071 17.7 1.7 1 23 279 301 279 301 0.97 6 11 7.8e-06 0.00061 21.1 2.9 1 23 307 329 307 329 0.97 7 11 3.1e-07 2.4e-05 25.5 2.5 1 23 334 357 334 357 0.97 8 11 5.4 4.2e+02 2.7 1.4 2 23 363 381 363 381 0.80 9 11 0.00063 0.049 15.1 3.3 1 23 387 409 387 409 0.88 10 11 0.048 3.7 9.2 0.8 1 23 415 440 415 440 0.94 11 11 4.3e-06 0.00033 21.9 2.5 1 23 446 469 446 469 0.96
Sequence Information
- Coding Sequence
- ATGGAGATTAATATTGATTTCGCTTGCCGAGCATGCTTACAAGAAACATTAAATGGCGTGTCTGTAAATGAAATAGTACAGGATTACAAAGTGAATATTGGTGAAATATTAACAGTCTGTACAGGTgtagatattttcaaaatgccTGATTATCCTGATAAAATATGTGAATCTTGTTCTTTGGAATTGCCAGAAGTTTGGAAATTCATCAAAATGTGCAAATCCTCAAACGAAgcactagaaaaatattatgaaaataaaaaaaaagatttagaaGATAAGCACTCCCTTAtgaagtttgaaataaaattagaatacaATCCACCCTCTGTCAATTCACACATATCAGCCGATGATATGGATCAAGATGCAGATGTTAAATTAAGCGATCaggatacaaaagaaaatctcaATGAAATCAAGGGAAAAAGAAACTTGAAAAGCAAAAGAATCACTAAGAAAAAAGTGAAGAATTCCAAGTCAGACTTCAAATGTCCATCATGTATTTTGGTTTTTGATACAGAACTTCGATTTAGAAAGCATTTGAAATCGGAGCACCCATCTCTTTTGCAACAGATGTTTTTTACATGTAAAGATTGTAAAAAGCAGTTTAAACGTAAAAGTGACTTGATTGTACACCAAAGAGTGCATTCTGGAGATAAGCCGTTTGCGTGCAAGCACTGTCCACAAAGGTTTGCGCAATCGGGGACTTTGATCGAGCACGTTCGTTGTCATACTGGTGAGACTCCCTTTTCTTGCAAAATTTGTTCCCGTGTCTTTTCATCAAGATCCTCATTTTGGCGTCATCGTCTCGTACATTCTGGTGAAAAACCTTACGCCTGTGAACAATGCGGTCGTACGTTTGCCCATGGGGCCACTTTAAAGCACCATCGACTTGTTCATACTCAAGACAGACCTCATTCATGCAAGTTATGTGGAAAAGCGACCAAAACAAAGTATTCTCTTCAACAGCACATGGTTACACATTCTGAAAAACATTATGTTTGCGAACattgtggaaaaaaattctccatgaagtataatttagaaaatcacattaaaaatatgcacTCGGACGAAGCTGGCCAGTGTTTCTTTTGCAAGAAAATAACATCTAACCTTAGTGAACACATGACTATTCACACTGGTGAGACGCCGTACCGCTGTCATATTTGTGATCGAACATTTAGACAGAAAAATAGCCTTTCTTTTCATGTAACTTTGCATAAAAATGCAGAAAAGTATAAATGTAAGGTTGAAGGTTGTACTAAAGCATTTCCGAAACAGAATATGTTAGACTTTCACACTCGAAAAGTACATTCAAATGAAACTCCTCATATTTGCCCGCATTGTTCAAAAGGATTCTTCCGTGCCAGTGACCTGTCTAGACACATTAATACTCTGCATCCAGATGAAGGGTAA
- Protein Sequence
- MEINIDFACRACLQETLNGVSVNEIVQDYKVNIGEILTVCTGVDIFKMPDYPDKICESCSLELPEVWKFIKMCKSSNEALEKYYENKKKDLEDKHSLMKFEIKLEYNPPSVNSHISADDMDQDADVKLSDQDTKENLNEIKGKRNLKSKRITKKKVKNSKSDFKCPSCILVFDTELRFRKHLKSEHPSLLQQMFFTCKDCKKQFKRKSDLIVHQRVHSGDKPFACKHCPQRFAQSGTLIEHVRCHTGETPFSCKICSRVFSSRSSFWRHRLVHSGEKPYACEQCGRTFAHGATLKHHRLVHTQDRPHSCKLCGKATKTKYSLQQHMVTHSEKHYVCEHCGKKFSMKYNLENHIKNMHSDEAGQCFFCKKITSNLSEHMTIHTGETPYRCHICDRTFRQKNSLSFHVTLHKNAEKYKCKVEGCTKAFPKQNMLDFHTRKVHSNETPHICPHCSKGFFRASDLSRHINTLHPDEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -