Oalb023521.1
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- su(Hw)
- Assembly
- GCA_949825065.1
- Location
- OX463855.1:10212652-10229484[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00027 0.021 16.2 1.7 1 21 45 65 45 66 0.96 2 13 0.02 1.5 10.4 3.2 1 23 181 204 181 204 0.91 3 13 0.82 63 5.3 0.7 3 23 213 233 211 233 0.96 4 13 6.4e-05 0.0049 18.2 4.0 1 21 239 259 239 260 0.95 5 13 5.1e-05 0.004 18.5 1.1 1 23 271 293 271 293 0.97 6 13 5.8e-06 0.00045 21.5 1.3 1 23 302 324 302 324 0.99 7 13 0.0015 0.12 13.9 2.2 1 21 330 350 330 352 0.95 8 13 2.9e-05 0.0023 19.3 0.1 1 23 358 380 358 380 0.98 9 13 3.1e-05 0.0024 19.2 3.1 2 23 387 408 386 408 0.94 10 13 0.073 5.7 8.6 6.4 1 23 414 437 414 437 0.95 11 13 0.00058 0.045 15.2 0.6 2 23 444 467 443 467 0.95 12 13 1.7e-05 0.0013 20.1 2.0 1 23 473 495 473 495 0.99 13 13 0.059 4.6 8.9 3.5 2 23 502 525 501 525 0.94
Sequence Information
- Coding Sequence
- atgAACCGGCCTAGAAGATCAAAAAGAGTTGCTATCGACTCGACGAAAGATGATATGTTAATCATCATAAAAACTCCAGAAAATGGTGGACCCGCAGAACAAATAGCTGATGTTAAAACATCTATCATTCAATACATGTGtaataaatgcaataaaaaatataccacaaCCGTAGGTCTTAAGcgacatttaaaattttgcaaTGATTCTTCCAATGATATTGGATTGACTATACCAAAAAAAGACCTCATATTGTCAAgtccaaagaaaaatataacactgCTAGAGAATCACAACGATTTGAACTCCAAGAATTTGAATTTGCTCTCTGACTCTAATAACATTTCTACATCCAGCAGAAACAGCGATGAAACTGAAGAGGAAGAATTGCTGAATAATATTGCTAACTTGTCAGAAGACAATCCGTATGAATTTGAAGATGATAATGATGAGAACATAGAAGCCAGTGAAATTATCGATGATCCAAATATATGTCAGTGTTGCGGAGAAGATAAGAGTACAGCTCATAAGgctGGTTTATTCAAATGCTATGTGtgcaataaaagtttcaaaatacaAAGTTCTTTTGATCTTCACAATACTAAATACCATTCAAAGAATGATGATGCCATCAATTGTAAGCAATGCAAAGTTATTTGTGTAGATGAACCGACCATGATTGAACACTTGAAAAAACATAACGAGGAAAAATGTTACGATTGCAAAAGCTGTCACAAGAAATTCACCAGAAGATACAACCTGGATAGGCACATGAAGCAGTTTGGATGCGGGGGTAAAAAGCAAACATTACACACGTGTCAGGCGTGCGGCAGTGAATTTTCCCGCAAGGACAATCTCTTGGTGCACCTGCGTATGCACCTAGGCGAGAATGGCAAGAAAAACTACAAGTGCGAGTACTGCGAGAAGCTCTTCAAGGGGAAGTCCCTGCTCACTGTACATCTGAGATCGCACACGGgaGAGACTCCCTTCTCATGTGACCAGTGCCCTAACTCCTTCAAGTCTAAGCCGGCCCTCATCAAGCACCTGCGCTGCCACACAGGGGAGAAGCCTTACTCTTGTGAAGAGTGTGGCAGAAAATTTGCGGCAGCCGAAACACTAAATCGGCACCGGCTAATCCACTCGGAGAGCAAACCCTGCATCTGTCTGCTGTGCGGCAAGTCCTTCATTCAGCCCTCGCAGCTACGCTCGCACATGTACCACCACACCGGGGTCAAGGAGTTCCACTGTGACCACTGCTCCAAAGGATTCCACAAGAGGGTCAAgttAGCCAACCATATAAAATTTGTCCATGAAGGAGCTCAGAAATTGCAGTGTTCCTGGGAAAATTGCACCAAAAAATTCATGACCAAAGAGGAAGTCAATCGACACATGATGATACACTTGGGAAATAAACCCTTCACATGTGAGACATGCAAAAAGAAGTTTACCAACCGTAGCATCCTGGTAGTGCACATGCGGACGCACCGCAGCGAGACACCTTGCGTGTGTCCACTATGCAAGCGCAGGGCCTTCATCCGTCAGGACTGCCTGCTACGTCACTTGCGCGCCAAGCACCGTGTCTTATATCTCGCCGCACTCAAAGAGGTTAAAAGAGCTAAGattgttGAGATGCAAACCAGACTATTCAGCTGCTCTTCAATTGTGGGCCCTACACACCCACCCATTACGTCTGAGAGAGAACAGGTGTCTCAAGATGTTTTGAACCGTATCAAAGAGATCTGCGCCAAGGAAGTAGAGattGACAACTTAAAATCAAGACTGAAAACTCGTAGTCAGACAAAGCAGGCCGAGAAGAGTAACAAGAAAAATAGATTGATAGAAAACCAGGATTCCCTAATTCAGTCTAGCGAAACTTCTGAAGGAATTGAGgtGGAAATTGTAGATATTCCATTAAATGAATCTTACTTGGCCACAAGTATTCAAGAGCTCTTAGACCTTTTGATTGATAAGGAGAGCTTTGCAGCCTTCAATTGGTCCAACAGATCAGTGGATGAGGTGCTTGAAGAAATTATAGTCAAATGTGGTCATACTCCTGCTAGTCCAGATATCAAAGAGAGGGCAGAGAGATTGAGGGAGAACGCTAAACTTTTACTTACTGTGGTCATTGatgataataatatgaaatctcTTTTCGAGACTCAGACTGTTGACGAAGTAATTCTCAGCGTTCTGAGGCTCGGAAAGGCCAACTGA
- Protein Sequence
- MNRPRRSKRVAIDSTKDDMLIIIKTPENGGPAEQIADVKTSIIQYMCNKCNKKYTTTVGLKRHLKFCNDSSNDIGLTIPKKDLILSSPKKNITLLENHNDLNSKNLNLLSDSNNISTSSRNSDETEEEELLNNIANLSEDNPYEFEDDNDENIEASEIIDDPNICQCCGEDKSTAHKAGLFKCYVCNKSFKIQSSFDLHNTKYHSKNDDAINCKQCKVICVDEPTMIEHLKKHNEEKCYDCKSCHKKFTRRYNLDRHMKQFGCGGKKQTLHTCQACGSEFSRKDNLLVHLRMHLGENGKKNYKCEYCEKLFKGKSLLTVHLRSHTGETPFSCDQCPNSFKSKPALIKHLRCHTGEKPYSCEECGRKFAAAETLNRHRLIHSESKPCICLLCGKSFIQPSQLRSHMYHHTGVKEFHCDHCSKGFHKRVKLANHIKFVHEGAQKLQCSWENCTKKFMTKEEVNRHMMIHLGNKPFTCETCKKKFTNRSILVVHMRTHRSETPCVCPLCKRRAFIRQDCLLRHLRAKHRVLYLAALKEVKRAKIVEMQTRLFSCSSIVGPTHPPITSEREQVSQDVLNRIKEICAKEVEIDNLKSRLKTRSQTKQAEKSNKKNRLIENQDSLIQSSETSEGIEVEIVDIPLNESYLATSIQELLDLLIDKESFAAFNWSNRSVDEVLEEIIVKCGHTPASPDIKERAERLRENAKLLLTVVIDDNNMKSLFETQTVDEVILSVLRLGKAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -