Oalb020759.1
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- ZIPIC
- Assembly
- GCA_949825065.1
- Location
- OX463852.1:20333253-20334599[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0013 0.1 14.1 0.0 1 23 154 176 154 176 0.98 2 10 9e-06 0.0007 20.9 1.1 1 23 182 205 182 205 0.97 3 10 0.00022 0.017 16.5 0.5 1 23 217 239 217 239 0.97 4 10 8.7e-05 0.0068 17.8 0.2 3 23 247 267 245 267 0.97 5 10 2e-05 0.0015 19.8 0.2 1 23 273 295 273 295 0.98 6 10 3.5e-06 0.00027 22.2 0.3 1 23 301 323 301 323 0.98 7 10 1.8e-05 0.0014 19.9 0.6 3 23 331 351 329 352 0.94 8 10 0.96 75 5.1 5.2 2 23 358 376 357 376 0.87 9 10 4.4e-05 0.0034 18.7 0.3 1 23 382 404 382 404 0.98 10 10 0.00018 0.014 16.8 1.0 1 23 410 435 410 435 0.97
Sequence Information
- Coding Sequence
- ATGGcagaatattcaaaaatatgcCGCGCATGTTTAAAGAAAGGTGAATACATGACATCCTTGTTTGACTGTGTAGGCTCAATAGATTATTGTCATCAAATAATGCATTGTGCAAGTATAAATATATCACAATTTGACGGACTCCCCTCTTTGATATGTACAGAATGCCAGTCAGAACTAGCAATCGCTTATAATTtcgttttaaaatgtcaaacttCCGATAAACACTTACATAAACAAATTTCATTAGTGAAAGTAGAAAAGGATAGTGGCGACAATGCTTCGGACTTTGGcgattttcaagataattttgaCGAAATAAAAGTCGATATACCTAGATGTAAAGTGGAAAGTTTAGAAAATaattctcgaaaaaaaaatagaaaagacggaaaaaaaagttcaataaaaaaagagcataaagTGAAGAAACAAAgagttaaaaaggaaaaaaaggagTTTATATGTTCGACGTGCGGAATAAATGTTGCCAGTAGAGCTGCAATGATAATCCACATGCGAAAACATACGGGTGAGAAACCCTATAAATGTCCAGTTTGTGATATGCATTTTTCACAGACAGGCACTCTCAAAGTGCACATAGAAAGGCGGCATTCAACACAGCCTCGACACTTGCGAGACCGTCCTTTTGCCTGTGAAGTTTGTGGTGGACGATTTTTCAGCAAGCGCGATCTCACAGCACATTCGCGTCGACATACTGGAGACCACCCGTATGGCTGTGAACTTTGTCCTCAACGTTTCACTCAAGTAGGCTCTCTTATTCGCCATCGTCGCATCCATACAGGCGAGCGTCCTTATCCATGTAAATTATGTCCTAAAACATTCATCGACGGTAATATGTTACGAAAACATCAACTTGTTCATACCGATGAACGTCGTTTTACATGTAACATATGCGGGAAAGCCGTCAAATCAAAATATGGCTTAGACAAACATATGATGTTACATCAGGAACGTAAACCTGTCATTTGTGACCAATGTGGTGCTACATCATCTACGAAAGGAAACCTAACAGCGCATATCAAGAAGCATCACTCAGAGAAGTCTGGACAGTGTCCAGTTTGTGGAAAACATTGTCCGGACTTGTCTGAACACATGAGAAAACATACTGGAGAAAAAGCTTATACATGCGGTGTTTGTGGAAAAGGATTCCCGCTCAAGATAAGTCTCGCTGTTCATATGCACAAACATACTCGTGTCGATAAATACAAATGCGAGAAAGAAGACTGTACAAAAGCTTTTACCAAAAAGAATCAATTAGatttacacatacttaaatctcATTCATACAAAATGAACTATGAAGgaatgattaatttaaattaa
- Protein Sequence
- MAEYSKICRACLKKGEYMTSLFDCVGSIDYCHQIMHCASINISQFDGLPSLICTECQSELAIAYNFVLKCQTSDKHLHKQISLVKVEKDSGDNASDFGDFQDNFDEIKVDIPRCKVESLENNSRKKNRKDGKKSSIKKEHKVKKQRVKKEKKEFICSTCGINVASRAAMIIHMRKHTGEKPYKCPVCDMHFSQTGTLKVHIERRHSTQPRHLRDRPFACEVCGGRFFSKRDLTAHSRRHTGDHPYGCELCPQRFTQVGSLIRHRRIHTGERPYPCKLCPKTFIDGNMLRKHQLVHTDERRFTCNICGKAVKSKYGLDKHMMLHQERKPVICDQCGATSSTKGNLTAHIKKHHSEKSGQCPVCGKHCPDLSEHMRKHTGEKAYTCGVCGKGFPLKISLAVHMHKHTRVDKYKCEKEDCTKAFTKKNQLDLHILKSHSYKMNYEGMINLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -