Oalb010709.1
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- -
- Assembly
- GCA_949825065.1
- Location
- OX463843.1:43783563-43812615[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.07 5.5 8.7 0.5 3 23 40 62 38 62 0.92 2 10 0.0004 0.031 15.7 0.2 1 23 186 208 186 208 0.97 3 10 8.5e-07 6.6e-05 24.1 1.0 1 23 215 237 215 237 0.98 4 10 5.8e-06 0.00045 21.5 2.2 1 20 243 262 243 265 0.95 5 10 0.0027 0.21 13.1 0.8 1 23 271 294 271 294 0.93 6 10 4.8e-06 0.00037 21.8 1.2 3 23 306 326 305 326 0.98 7 10 2.7e-06 0.00021 22.6 3.6 1 23 332 354 332 354 0.98 8 10 1.4e-06 0.00011 23.5 0.5 1 23 360 382 360 382 0.96 9 10 1.6e-06 0.00012 23.3 0.7 1 23 388 410 388 410 0.98 10 10 1.4 1.1e+02 4.6 0.5 3 15 418 430 416 432 0.82
Sequence Information
- Coding Sequence
- ATGGAAGCACGAGATATTAGTGACCTATCTTCAGTTTTGGACCCGAATGCAAAGAAAGAGATTAGaCAAACACCTTATGAAAACCATAAAGCATCCTGCCAAGAAAAAGATCTTCACTGCAGTACCGTCTGTGATGAAAGTTTTCAAACTTCTGATGAAGTCTCGGAACATAGTAAAGTTGTTCATTGTCAAAAACAAGaactACCTATTGAGTTGGCGGAAAAAGTTGAAACGACCAAAATAAATGGTGTTGTTGCTGAACAGCAGATTTTTAGTGAAATCCGCATTCTTGAGTTTGGTGTTAATATTAAGGATGAACCACTCGATGAACTGCTGGAAGAGGCTGATAATAAAACTAAGATTTCAGACATTGAAGACGAGACAGGATTCGATGATGGGCTTGATAATCCAAATATGAGTGATCATAGTGAGGAATTTCAAAGTGACCATTCTGATTTTAAACCTCACGAGTACAAAAAACCCAAACAAATCAATCTGAAGAGACTtagcaaaagaaaacacaaactAAAAAGAATCAAGAAAAATTTGGGTGCCTTCCCGTGTACCATGTGTCCAAAAATATTGTCTTCAAATTTGAACCTTAAGCTGCATTTGGCCAAACATTCAGGCGAGTCCATAATTTTCACATGTGTGGTCTGCGGAAAGACATTTGACCGGTCATACCTTTTAAGAAAACACGAACTGACCCATGAATCATTAAAGATTTATCCTTGTGAATCGTGCGATAAAACTTTCTACAGACAAGACCATTTAAACAAACATATGTGGCAGCACGTGGACATGAAGCCCTTCCAGTGTGACATATGCCCCAAGGGATTCCTGAAGGAGCAGCATCTCGAGAGACACAAGCTGGCTTTGCACTCTGGAAAGCAGAAGAATCCAAAGACGGCTTTCTGTTCTATTTGCAATCGAGGTTTCACAACAGAGAAGTATTTGGAGACGCACATGAGGATGCATACGGGAGACAAGACATTCACCTGCAAGGTGTGCGACAAATCCTTCAACTCCAAGTGGCACCTCAAAGAACACACCAAGTGGCACTCGGCCGAGAAGCCCTTCTTATGCTCCGAGTGCGGGCAAAGattTATCCGCAACGACTATCTGGTGATCCACATGAGGCGGCATAAGGGAGAAAAGCCGTACAAGTGCAAGTTCTGTGGGAAGGGTTTCCCGCGCGCCACTGACCTTACTGTGCACGAACGCTACCACACGGGGGAAAAGACCCACCTCTGCACAATTTGCGGAAAAGGTACAGTTGACTGTTCCTTATTTGTTTGA
- Protein Sequence
- MEARDISDLSSVLDPNAKKEIRQTPYENHKASCQEKDLHCSTVCDESFQTSDEVSEHSKVVHCQKQELPIELAEKVETTKINGVVAEQQIFSEIRILEFGVNIKDEPLDELLEEADNKTKISDIEDETGFDDGLDNPNMSDHSEEFQSDHSDFKPHEYKKPKQINLKRLSKRKHKLKRIKKNLGAFPCTMCPKILSSNLNLKLHLAKHSGESIIFTCVVCGKTFDRSYLLRKHELTHESLKIYPCESCDKTFYRQDHLNKHMWQHVDMKPFQCDICPKGFLKEQHLERHKLALHSGKQKNPKTAFCSICNRGFTTEKYLETHMRMHTGDKTFTCKVCDKSFNSKWHLKEHTKWHSAEKPFLCSECGQRFIRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLTVHERYHTGEKTHLCTICGKGTVDCSLFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -