Oalb006087.1
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- -
- Assembly
- GCA_949825065.1
- Location
- OX463840.1:43298927-43304173[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.005 0.39 12.3 1.9 3 23 86 107 85 107 0.96 2 23 0.32 25 6.6 0.2 1 21 517 537 517 538 0.96 3 23 2.7 2.1e+02 3.6 0.2 1 23 594 617 594 617 0.89 4 23 0.16 12 7.5 1.8 5 21 630 646 627 647 0.92 5 23 0.14 11 7.7 0.3 3 23 656 677 654 677 0.89 6 23 0.0024 0.19 13.2 1.7 3 23 700 721 698 721 0.94 7 23 0.91 71 5.1 6.3 1 23 727 750 727 750 0.95 8 23 0.23 18 7.0 0.1 1 23 785 808 785 808 0.93 9 23 0.012 0.97 11.0 0.3 1 23 813 835 813 835 0.96 10 23 0.053 4.1 9.0 0.5 1 23 841 864 841 864 0.97 11 23 0.0028 0.22 13.1 2.3 1 23 878 900 878 900 0.97 12 23 0.0036 0.28 12.7 1.6 1 23 944 967 944 967 0.97 13 23 0.0001 0.0078 17.6 0.9 1 23 1034 1057 1034 1057 0.98 14 23 0.004 0.31 12.6 1.1 2 23 1076 1098 1075 1098 0.96 15 23 0.1 7.9 8.2 0.2 2 23 1104 1126 1103 1126 0.93 16 23 1.3 1e+02 4.7 0.4 1 10 1176 1185 1176 1196 0.82 17 23 0.00045 0.035 15.6 1.0 1 23 1207 1229 1207 1229 0.93 18 23 0.017 1.4 10.6 0.4 3 23 1329 1350 1328 1350 0.90 19 23 9.3e-07 7.3e-05 24.0 1.9 3 23 1357 1377 1356 1377 0.98 20 23 0.19 15 7.3 4.6 1 19 1405 1423 1405 1428 0.90 21 23 0.062 4.9 8.8 0.5 1 20 1458 1477 1458 1478 0.94 22 23 2.7e-05 0.0021 19.4 0.8 1 23 1479 1502 1479 1502 0.96 23 23 6.3e-05 0.0049 18.2 1.3 1 23 1511 1534 1511 1534 0.97
Sequence Information
- Coding Sequence
- ATGATTAGGGATGTGGACTTCCCATTTTTAAAGgaAGTGGAAGATGGACATGATGAAGATTATGCAAATGATGAAGACTTTGCAGAAGATGAGAATCAGAAGACTGGATCAAGTGATGCTGATGAAGATAAACAAAGATCGGACAGCGATCATACAGAATATGAGAAATTGAAGTCTGCGCTTACGGGCAAAAGTTCCTCTCAGCCCCCGGTTGTCTTGCGGTCCCTACCTGTTGCTCAGCTAGGTTCTAAGAACTGCCTCATTTGTGGCCGATCTTACCGGTACTCTCACAATGCACGTCGGCATGAACTCACTTCACACAATTACGACCGTTACACAAACAAAGTGAAATCGCCCAGTCCTACTTTGACTAAAATGATGCCAAATCCTTTGAATCCTAAATCTAGGCTTTTACCTAATCCGATcaaccttaaaaataaaatgttgccaAAGTCATCGCACAAGAACTCGGAAGCCCCTTCTGCAAAGGACAAAGTGTACCCAGTGAGAATTAGGTCTTTAGCCGATTTGCAGAACAATGGGCGAGAACCAGAAATTTTGAAATCGCTTCTTACTGGGAAACCTGAAATTTTGGTTTCTGAGCCAGAAATTTTAAGATCTCGTTCAGTGAGTCCAGAAACATTAATATCAGAACCTGAATTGTCAGCGTTCCATGTTGAGACGATAATTTCAGAGCCAGATACTTACATTAACCATTCGGATGAATCCGACGAGGAAgataatattgaagaaaatagGTTCGATGGGTCAGTTGCAGATGATGGAGAGTCCGAAGAGGAGGTGGAAATTTCATCAAATGtggacataaataaaattatcggAATCGAAAGTCAAGAGCATCGCCAAGGGAGAGAGAACCATGTTGACTCCACAGAGGAAATTACTCCTGATGTCAACGAGacagatgaagaagaagaccacAATACAAATCACTTTGAAGAAGAAGAGTCTGAAAATTCTGGGGATGACGGAGCAGAAAACGAAATGGAATATAACGGGGATAACACTGGGGCTGATGAACAAGAAGTGGGTGATGAAACCGCCCACGatgaagaaaatgaaataacGAACGAATATAATCAGACCGGTAATGAATATGATGAGTCAGCAAATGAGAATAATGTTGACACCACACATGGTGAAAGTCAAAATGAGAGTTCTCAACATTACCAAAGGGATAGTGATGAAAGTGGCCCAGATTATCCGGATGATGGAGAAGATGATGATATGTTGCCTGTTCCTATCGCGCCGATAGTTGAAATTAATGAACAACCTGATCCTGAAATCCTGGAACACACCGAGAATGAGAATGAAAATGGTAACGACACATTGAATGAGTCCATTGATATAAAAGAAATCTCCCTGCCTTCTATGACTATTACTCCAGCCCAGAAAgcttttatcttgaaatatagaGATGTCATAGAGCAAGTGAACACCTTGAAGTGCAAGTGCTGCGATAAGGCACATCCAAAAAGAAAGGCTGTTATTCAGCATTTAcagaaaaatggtttaaaagttCCCAAACACACCTGTTACAATTGTGTTATAACCTTTGGACATATTGGTGCACTTTTGAGTCATATGAGAGCTAACATATGTACTGATTTATGGAAGATTATTTACGAAGAAGGAGGAATCCCCGATAGTATGGTTTCTGAAAGCAATGCTACGCAAGAATACAGAATAGGTGATGCCTCAGGACGTGAAGATACTATTAACAAATCTCAGTACAAGGACATATTGAATTCAAGGACTTATGCCTGCAAGCTATGCCCTGCTAAGTTCCAGCTTAAACAGTTCATTATGAAGCATATATTGGATGTGCATGAGAACGGAGGTCAACGTATACCTTTATTATGCATACATTGCAAGTATAGGTTTAAGGACAACAGATTATGGAAGAAGCATATCCGAAATGGAGAGTGCACAGTGCATATAGCTTGTGAACTGTGCAATGAGAAGTTTAGGTCACTTCTGCATTTCAATGATCATGCTCTTGCAGTCCATGCTGGAGGCTTTGTCGAGAACTCTTCAGATAATCTGTCCCGCTCGGTAGATGGGAGGCGCACTGATTGTCCAATATGTCACAAAAACACAGCTTCTTATCATAATCTGGTAAAGCATTTAAAAGCTATTCACAACGAAGAGAAACCTCACATGTGTCAGCATTGTGATAGTAAATTTGAAACGGTCACGGAGTtcaatcatcatatttataaagaGCATTCAGAAAGAGTTACCAATGGAGATACTAGTCAAAATGCTGAACAAGATACAGAGGATCAAGTAGACTTGAGCATTGTGAAACAGGAAGTCACTACTTACAACTATTCTTGTACCGACTGTTCCTCAATGTTTGATTCTGTCGATGGTTGGACTCAACATCAAATAGATGCCCACAATCATACAGCGTACGAATGTGACCAGTGTGATAAGAAATTCTTGCAGGATTCAGAATTGATTGATCACAAGAATGCTCATTTGAGAGTTAAGTTTTATTCTTGTACAGTTTGCTCTAATTCTTACGGCACCCCTCAAAGATTGTCAGATCATATGCTAAAAAGTCATCCGGGCGATATTGGAGCTGACGGGTCTTCAGATACTCCTTTCTTTTGCGAGATGTGCATGAGATCCTTCAAGAGTCGACAAGCATTCTCAAATCACATGCGAATTCACGCTAATGTTCCGTCTCACAATAAGAAACCTGGAGTTGTTGAAAAAGTAGTATTAAAGAAACCTCCACCTCAAGCTGTCCCTTACAATATTACATTTAGGAACTCTCCCAAGATGATGAACGATGCTCCTTATTCTTGTGACATATGTGGGAAAGGATTTttacataagaaaaatatttggaagCACAAAAAAGTCTTGCATCCAGATATTGTCAGGAGGATCGAGTTAGAAAAAAGCGGGTCACATTTCATGAATATTGAAGAAGATGAATATATAAATGATGATCCTAATGCTATGACAGGTCTATCTATACCTCAGTTTGATAGTTTTACTACTGCTGCTTTCGAGGACATTCCACTTGAAGAAAATTTCAATACAACACCTGAACCACCTCAAGTGTATCAGTGTGACCTTTGCGATAAGAAGTTTGCAGTGAAAAGTAGTATTTGGAAACACAAGAGAGTAAAACACGGCATTGTTAATCCTAACATGCAGGAAGAAAACATGAAGAATGAAAGCAGAACTAGTTGCACGATATGTAAAGTTAATTTCCCTGACAAAAAAGCCTACTATAGACACAGGAAGACTGTACATAAAGTTAATGTTCAGTCTtgcaaaatatgtggaaaagcTTTGAATTCCACTTTAGAATTGTACGAGCACTACAAGGCCTCACACGCTAAGGAACTGTTAGGATACAATGCGAGTCAAGGAAATCCAAATAAGGCCCAGTCTGAATCTCATTCTCGATCTCACAGAGAGTCGAGTGAAGAGGGTGAAGAATACCAAGAGTCCGAGAATCCAGAAGATCAGTATCAAGCGAGGTACCCGTGCGCAACTTGCGGCAAAACATTCTTGGGTATGATGGCTTTACAAAACCATAACTGTCTTCAACAGAATTCCTCAGGTTCTGAAAAGTTTGATTGTGAAATTTGTCACAAGAGCTATACATCCATATCAGCATTGAAGAGCCATAGAGGATGGCATTTACGATCTCCCGATGGTAAAGCTGCATTTAGTAGCTCTGGATTGTGGATGCCTCAGAACAGACAAACCAATAAAGTCAGTAAATTTGAAGTTCGTGATGGTCTGACGGTCAAGCATTCCACTCCCATTTCAGATCCGGAGCATTTGCAAATTAAACGTAAATTACCACCTGATGTACAAATGACtcttttgaaaaagaaaaagttgTCGGACGAAGTAACTGTTGAATTAGTGCAAACTGTCCCTCGAATTGATCCGGCAGCCATGCAGAAGCAAGCGGTCAATGAGACAAGAGTTTGTCACCCCTGTGGAAAAGAGTTTTCTAAGAAAGCTGCATTCCTCCGTCACGTCGAAGAAGTACACCGTCCCAACTCTGCTTTCTGTCCCATATGCAATAAGAGTTTCACGCGAAAATCTACATTACTAATGCATATGCAGAAACATGGCATTATGGCTGGCAATGCTGTGTCAGTCAGGGCGGAGATGGAAGAGGAGGCTCCTGTAGCAGTTCCTCCTGAGAGGTATTATAATTGTGATCTCTGCAATGTAAGATACACTTCTGCCAAATCTCTTCGACGGCATTGTGTAAAACATCATAACATCGCAGCCGAAGATGTGATTGAAGAAAGACCGAATCCATCGAGTATAGTCGGCACTCGAGTGATAGAAGTAGGTGGTTCAAAACACAAATGTGGCCAGTGTGGAGAAGTGTTTGCTTCTGACAAAGATATGTGGCAACACCGACATTATTCCTGTGACCAGTGTGGAATGTTCTTCTCCAGACAGCAGTATCTCACTGCGCACGTCCGCGCTCGGCACCCGCAAGAGAGCGACAAGACATTCTTCCCCTGCAACATGTGTGACAGGTTCTACATGAACAAGAAGAGTCTGCAGAGACACATCGAAACCTCTCATTAA
- Protein Sequence
- MIRDVDFPFLKEVEDGHDEDYANDEDFAEDENQKTGSSDADEDKQRSDSDHTEYEKLKSALTGKSSSQPPVVLRSLPVAQLGSKNCLICGRSYRYSHNARRHELTSHNYDRYTNKVKSPSPTLTKMMPNPLNPKSRLLPNPINLKNKMLPKSSHKNSEAPSAKDKVYPVRIRSLADLQNNGREPEILKSLLTGKPEILVSEPEILRSRSVSPETLISEPELSAFHVETIISEPDTYINHSDESDEEDNIEENRFDGSVADDGESEEEVEISSNVDINKIIGIESQEHRQGRENHVDSTEEITPDVNETDEEEDHNTNHFEEEESENSGDDGAENEMEYNGDNTGADEQEVGDETAHDEENEITNEYNQTGNEYDESANENNVDTTHGESQNESSQHYQRDSDESGPDYPDDGEDDDMLPVPIAPIVEINEQPDPEILEHTENENENGNDTLNESIDIKEISLPSMTITPAQKAFILKYRDVIEQVNTLKCKCCDKAHPKRKAVIQHLQKNGLKVPKHTCYNCVITFGHIGALLSHMRANICTDLWKIIYEEGGIPDSMVSESNATQEYRIGDASGREDTINKSQYKDILNSRTYACKLCPAKFQLKQFIMKHILDVHENGGQRIPLLCIHCKYRFKDNRLWKKHIRNGECTVHIACELCNEKFRSLLHFNDHALAVHAGGFVENSSDNLSRSVDGRRTDCPICHKNTASYHNLVKHLKAIHNEEKPHMCQHCDSKFETVTEFNHHIYKEHSERVTNGDTSQNAEQDTEDQVDLSIVKQEVTTYNYSCTDCSSMFDSVDGWTQHQIDAHNHTAYECDQCDKKFLQDSELIDHKNAHLRVKFYSCTVCSNSYGTPQRLSDHMLKSHPGDIGADGSSDTPFFCEMCMRSFKSRQAFSNHMRIHANVPSHNKKPGVVEKVVLKKPPPQAVPYNITFRNSPKMMNDAPYSCDICGKGFLHKKNIWKHKKVLHPDIVRRIELEKSGSHFMNIEEDEYINDDPNAMTGLSIPQFDSFTTAAFEDIPLEENFNTTPEPPQVYQCDLCDKKFAVKSSIWKHKRVKHGIVNPNMQEENMKNESRTSCTICKVNFPDKKAYYRHRKTVHKVNVQSCKICGKALNSTLELYEHYKASHAKELLGYNASQGNPNKAQSESHSRSHRESSEEGEEYQESENPEDQYQARYPCATCGKTFLGMMALQNHNCLQQNSSGSEKFDCEICHKSYTSISALKSHRGWHLRSPDGKAAFSSSGLWMPQNRQTNKVSKFEVRDGLTVKHSTPISDPEHLQIKRKLPPDVQMTLLKKKKLSDEVTVELVQTVPRIDPAAMQKQAVNETRVCHPCGKEFSKKAAFLRHVEEVHRPNSAFCPICNKSFTRKSTLLMHMQKHGIMAGNAVSVRAEMEEEAPVAVPPERYYNCDLCNVRYTSAKSLRRHCVKHHNIAAEDVIEERPNPSSIVGTRVIEVGGSKHKCGQCGEVFASDKDMWQHRHYSCDQCGMFFSRQQYLTAHVRARHPQESDKTFFPCNMCDRFYMNKKSLQRHIETSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -