Oalb011791.1
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- Tkfc
- Assembly
- GCA_949825065.1
- Location
- OX463844.1:38223718-38287298[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.89 70 5.2 0.0 10 23 683 696 681 696 0.92 2 12 0.014 1.1 10.8 0.2 2 23 720 741 719 741 0.94 3 12 0.00095 0.074 14.5 6.4 2 23 749 770 748 770 0.98 4 12 0.0031 0.24 12.9 4.7 1 23 776 798 776 798 0.98 5 12 0.034 2.6 9.7 8.6 1 23 807 829 807 829 0.96 6 12 3.2e-06 0.00025 22.3 0.2 2 23 836 857 835 857 0.97 7 12 1.1e-05 0.00088 20.6 5.6 1 23 863 885 863 885 0.96 8 12 1.1e-06 8.7e-05 23.7 0.2 1 23 891 913 891 913 0.98 9 12 7.7e-06 0.0006 21.1 1.6 1 23 919 941 919 941 0.98 10 12 0.00033 0.026 16.0 1.9 1 23 947 968 947 968 0.98 11 12 5.5e-06 0.00043 21.6 0.3 1 23 974 996 974 996 0.98 12 12 4.5e-05 0.0035 18.7 2.9 1 23 1002 1025 1002 1025 0.97
Sequence Information
- Coding Sequence
- ATGGTAGATGTCGCTGAGAGAATTGCCACCCAGAGATGGAACTGGACAGGATATATTGCCAGTACTGATGATAGGGCCTTGGGACAACACGGCACCGAGAGCGAAATTGCTCGCGTCTGTCGTGACATTGAAAGGAAAGGGGCTGGATCTCGGAGCGTTGTCCTCCGCAGCGATGGCTTGATCTTGAAGGTTTCTTCTTCAGAGGTGGCTGAATCTCAGAGCGTTGTCTTCAGCAGCGATGGCTTGATCTTGAAGcaaCAAGTAACTTCAAATGTAGCTGTGCTATCTGGTGGAGGCTCAGGACATGAGCCTTTTACTACAGgatatgttGGAAAAGGAATGCTATCTGGAGCTGTGGCTGGGAATATATTTGCATCTCCACCAAAGGCCCACATTCTTCATGCactgaaatacttgaataactattataaagGAggaatatttgtaataataccAAACTACACTGGAGACTGCCTTAACTTTGGAATGGCAGTAGAACAAGCAAAAGCAGACGGAATCAATGTGGATTCTTTTGCATTTGGAGAAGACTGTGCTTCGGGACAGCATTCAAAAGCTGGTAGAAGAGGCATGTGTGGCATTCTTCTTTCATATAAGaTATGCGGAAGTCTGGCAACCAATGggaaaaacttaaattatatcTTGAAGACCATGGCCCAAATACAGGACAATATTTCAACTTTAGGAATCAGCCTCGGTCCTTGTTCATTGCCAGGTCAGCCACCACTGTTTGCAGTAGCTAAAGAAGAAATGGAACTGGGAACTGGTATTCACGGTGAAGCTGGAATAGAAAGACTCAAGTTGACTACAGCAAAGGAGGCCGTCGGGATTATTCTACAAAGGCTTTATAAAGCTATGGATTTGAATGAGACAAGCACTTCTGTTGTGGGCAAGTCTAAATTTCTGTTAACCCAAAGTATGCAAAGACTGCTGAAGGAATCTCTCCATGCAGCATGCCAGAAGTTGATAGAAAGTGAAGCGTATCTCAACGAACTGGATGCTGGGTGTGGGGATGGAGATTGTGGAACCACACTTAGGAATTTGGCTAAAgggATCCTACAGGCACTCACAAGTATAAGTCTGGAATGCCCAGCTCAGGTTTTACAAGTGTTTTCGGAGATTGCTGAGACCAAAATGGGAGGAACATCAGGAGCTATTTACTCTCTAGGATTCACATCTATGAGTAAACATTTTACAGATACAAATAATGAGGAATTAGCGATTGTTTGGGCAGAAGCCATGCAGGATGGGCTAAAAACTGTTATGAAGTATGGGCGCGCACAACCAGGAGACAGGACgattATAGATGCCTTACATCCTGcagtagatattttttatgagaaaGTTGTAAAAGAGCAAAGTGATGTCGAAAGTGCCTTGCAAACGAGTGTTCAAGAAGCCAAAAGTGGGTGCGAAGCCACAAAAACTATGAAGGCCAGAGCGGGCCGAGCAAGTTATGTAAATGAAGATAGATTAAAAGATGTAGACGCAGGAGCTTACGGTTGTCGTTTGGGGATGGACTTCCAGAAAGAGTTTGCGGAGAGTGTACTGAACTTGTTGGGAAATGCTTTGCCTTCAAGCAGCTGTGCGAAAGGTCCGAGACCATGCTCAGGTGCTTGGTCACCCAGGGACACCTTCAAGGGATGCGGCATGAGACTGAAGAGGATGTCGATGTTCCGAGTCCCTAAAGAACAACCAGAATCTAAAGAACAACCGGAATCTAAAGAACTGAAATTTCACCCCTCTTTCTTACCGATATGTGAAAAGGCCATCATAAAGACATTATCTATCACCCGACTTCCATCTGTTTCTGTGAATCCAGGCAAACGAAGCAAGCGTGGGAAATTTGGGAGAGTTAAAAAACgtatccacaatattaataaacctaACGCATTTGAAAAAAGTGCAGATACGAAATCTCGTCAAATATTGCACAAGGCATACAGGAAAAAAGAGGGAGGAAAAGTAGAAATTAAAGTGGAAGTGGATGATACGCATATAGCATCGGATAACAGTTTTCTTCAGGGATTTTCGGAATCTGGTGATCTTAAGCGTCATGAGCGTAAGCATGCTGAGCCCAAACCCAGCCAAGGGGAATCGATCCGAGAGGCAGGCCCCAGTTCGCCCGGCCTCAGGGTACCCTGCCCCAAGTGCCACCTCACATTTGGCTCCGAAACTGACCTCGCTATACACTCTTCGGTGCATGTCATGCATGATGGCAGGACCAAGTGTCACCATTGCAAGAAGGAATTTGACACTATACTCCAGCTCAAACGTCATGTACGTACACATCTAAAAGACAAGCCACACAAATGCAGGATCTGCCACAAAGGTTTCCCAGAAATGGGGTCTCTCACACGCCACTTCCGCCGCCACACGGGAGAAACCCGGGAAAAGAGGCATGTCTGCAGCCACTGTGGCAAAGCATATTACGACAGGCACTCGCTAAATATCCACTGCCGCAAGCACACTGGTGAACGACCTTGGGTGTGTTCGGAGTGTGGACGCGGCTTCACCGATTCTCGCCTTCTCAATTCACATATGAAGATACACAGTGACCTCAAGCCGCATGCATGCACCATGTGTGATAAAAAATTCAAACATGAAAGCACTCTGACTACCCACATCAGAACGCATAcaggagagaagcccttcatcTGCACGGTGTGCGGCAATGCCTTTGTGCAGTCCTCCAATCTGTCCCTGCACATGCGCACGCATACACGGGAAAGGCCATACTCATGCGAATCATGTTCTAAGAGGTTCTCCAGCTCCTCGGCACTCACCACGCACCGGCGCATCCACACCGGGGAGAAGCCCTACACCTGCCCCATCTGCCAGAGGAGGTTTGCCCGACATGACATGACGGCACACATGCGCACTCACAcgggagagaagcccttcgtgTGTTCCGTGTGTTCACGAGGGTTCACCACACCAGGGCAGTTGCAGCAACACACTCGGATACACACAGGTGAAAGGCCATTCATCTGTCAGATATGCCGTAAGGGCTGCACAACCTCCAGCTACCTGAAGAAACACATGCTGAGAGCCCATAACATCAGCGATATGTCCACTTTACCCATCATCGACCCCACCACTCTGGACACCCTCCAGCTGACCATCAAGAAAGATCAGGACTCTGCTCCAGCATCCCAAACTGACAAGATCATCGCTACTCCTGTTGTAACAGACAGTCATATAATCAATGTTGGAGGAACTCTCACCCTCACCACCAATACTCTCAATGTCGTTACCCTGTCCAACGGAGAGTTGAGTATACTTCGTCATCAAAATGATTTGAATGTCGCAACGTTAACCGGTCAATCCGGTGATAATATAGGCACAATAGGCACCATCGTCACAAACACTCTAGTCTCCGAAGAGAAACTTTGCCAGATTGATCCAAGTTTACTGAGGATTCACCACATCTCGGCTAATAATATTATCCAAGGACAAGTTACCATTAGCGAACTCACTAACGATGAGGAAAGCTAG
- Protein Sequence
- MVDVAERIATQRWNWTGYIASTDDRALGQHGTESEIARVCRDIERKGAGSRSVVLRSDGLILKVSSSEVAESQSVVFSSDGLILKQQVTSNVAVLSGGGSGHEPFTTGYVGKGMLSGAVAGNIFASPPKAHILHALKYLNNYYKGGIFVIIPNYTGDCLNFGMAVEQAKADGINVDSFAFGEDCASGQHSKAGRRGMCGILLSYKICGSLATNGKNLNYILKTMAQIQDNISTLGISLGPCSLPGQPPLFAVAKEEMELGTGIHGEAGIERLKLTTAKEAVGIILQRLYKAMDLNETSTSVVGKSKFLLTQSMQRLLKESLHAACQKLIESEAYLNELDAGCGDGDCGTTLRNLAKGILQALTSISLECPAQVLQVFSEIAETKMGGTSGAIYSLGFTSMSKHFTDTNNEELAIVWAEAMQDGLKTVMKYGRAQPGDRTIIDALHPAVDIFYEKVVKEQSDVESALQTSVQEAKSGCEATKTMKARAGRASYVNEDRLKDVDAGAYGCRLGMDFQKEFAESVLNLLGNALPSSSCAKGPRPCSGAWSPRDTFKGCGMRLKRMSMFRVPKEQPESKEQPESKELKFHPSFLPICEKAIIKTLSITRLPSVSVNPGKRSKRGKFGRVKKRIHNINKPNAFEKSADTKSRQILHKAYRKKEGGKVEIKVEVDDTHIASDNSFLQGFSESGDLKRHERKHAEPKPSQGESIREAGPSSPGLRVPCPKCHLTFGSETDLAIHSSVHVMHDGRTKCHHCKKEFDTILQLKRHVRTHLKDKPHKCRICHKGFPEMGSLTRHFRRHTGETREKRHVCSHCGKAYYDRHSLNIHCRKHTGERPWVCSECGRGFTDSRLLNSHMKIHSDLKPHACTMCDKKFKHESTLTTHIRTHTGEKPFICTVCGNAFVQSSNLSLHMRTHTRERPYSCESCSKRFSSSSALTTHRRIHTGEKPYTCPICQRRFARHDMTAHMRTHTGEKPFVCSVCSRGFTTPGQLQQHTRIHTGERPFICQICRKGCTTSSYLKKHMLRAHNISDMSTLPIIDPTTLDTLQLTIKKDQDSAPASQTDKIIATPVVTDSHIINVGGTLTLTTNTLNVVTLSNGELSILRHQNDLNVATLTGQSGDNIGTIGTIVTNTLVSEEKLCQIDPSLLRIHHISANNIIQGQVTISELTNDEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -