Basic Information

Insect: Odontocerum albicorne
Gene Symbol: Prdm9
Assembly: GCA_949825065.1
Location: OX463868.1:14394117-14411165[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0038 0.29 12.7 0.1 1 21 372 392 372 393 0.92

2 10 5.9e-07 4.6e-05 24.6 0.7 1 23 468 490 468 490 0.98

3 10 4.8e-07 3.8e-05 24.9 4.1 1 23 496 518 496 518 0.99

4 10 1e-06 8.1e-05 23.8 0.4 1 23 524 546 524 546 0.98

5 10 6.6e-06 0.00052 21.3 1.2 1 23 552 574 552 574 0.98

6 10 1.8e-05 0.0014 20.0 5.0 1 23 580 602 580 602 0.98

7 10 3.5e-07 2.7e-05 25.3 1.1 1 23 608 630 608 630 0.98

8 10 0.39 30 6.3 0.3 7 23 642 658 636 658 0.84

9 10 6.4e-06 0.0005 21.4 0.7 1 23 664 686 664 686 0.98

10 10 4.8e-07 3.8e-05 24.9 3.9 1 23 692 714 692 714 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0038	0.29	12.7	0.1	1	21	372	392	372	393	0.92
2	10	5.9e-07	4.6e-05	24.6	0.7	1	23	468	490	468	490	0.98
3	10	4.8e-07	3.8e-05	24.9	4.1	1	23	496	518	496	518	0.99
4	10	1e-06	8.1e-05	23.8	0.4	1	23	524	546	524	546	0.98
5	10	6.6e-06	0.00052	21.3	1.2	1	23	552	574	552	574	0.98
6	10	1.8e-05	0.0014	20.0	5.0	1	23	580	602	580	602	0.98
7	10	3.5e-07	2.7e-05	25.3	1.1	1	23	608	630	608	630	0.98
8	10	0.39	30	6.3	0.3	7	23	642	658	636	658	0.84
9	10	6.4e-06	0.0005	21.4	0.7	1	23	664	686	664	686	0.98
10	10	4.8e-07	3.8e-05	24.9	3.9	1	23	692	714	692	714	0.99

Sequence Information

Coding Sequence: ATGATCCCGATGCCCACCTACTTGAAGCGATACATGGAATGGAGGAGCAGCGTCCTGGAGTCTACTGGGGAAAATACCAAAATGAAAGCATCAACAAGTGAACCCAAACTGACAACTTGTGAGCCGCAACCATCAACTAGTGGTTCGAAACCATCAACCAGTGGGTCGAAACCATCAACTAGCGGGTCGAAACCATCAACCAGTGGGTCGAAACCATCGACCAGTGGGTCGAAACCATCAAACAGTGGGTCAGAACGATCATTCAGCAGCTTTAAACCAACTAGTGGTAACGCCAGGCTTGAGAAGCAGAAACAGAGGATGAGGAGGAAATTGGAGAAGAAACGGATGGACCGAGACGTGGAAGAATGTTTCCGAGGCTTCTCGCAGCTTGAGATTGACGAAAGCAAGAAGAACCTGGAGAAGTCCCAACTCATCGTGGACAAGGCTCGAGCTCTTCTCAGTGACTCCGAGTCGGACTCCGAGTTGATCTACAAGAAATGCAGGCAGCTCAGGAGAAGGAGGAAGCGTATCAACTACATGGAACTTTCCGAACCTGAGGATGATGCTTACATATGGTGTGATCTCTGCGAGAAGAGATATCTCAAGTACTGTCCCGAGCATTTGCCTCTTGTGGTGATACCGGATAATAAGGAGAAAGTGGAAGGACAGCCCCTAAGCCTGAGTTCCGCTCCTCCCTACGTGAAGGTGGCCTCCTCGGGTATTCCGGGGGCGGGGCTGGGAGTATGGACTGGTCCCGAGGGGCTCCCACAGGGAGTGCGCTTTGGTCCTTACACTGGCCGTTTCACCTCAAAAGCAGACCCACGCAGCTATTATGTCTGGCGGGTGTACACCAAGGACAGAGGGAGAAGGTTCGTGGACGCGGCAGATCCGGCAGAGTCCAACTGGATGCGATACGTGAACTGCGCGAGGAACGTGAGAGAGCAGAATCTGCAGGCCTTCCAGTACAGGGGGCAGATCTACTACAGGACGGTGAGGAACATTCCGGGGCGCACGGAGCTGCTGGTGTGGTACGGGCCCCAGTACGCCAAGCAGCTGGGCATACTCGTGGAGCAGTACTCTGTGCCCTGGCCGATAGACGGTGAGATGCTCCTATACACATGTGAAAAGTGCGACATGTCATTCCGCTCACCAGTGAGTGCACTCGATCACTTGAAATTGTGCACTGTTAACGGTGAAGAAAAACCCATTCAGAAGAATTCCGACAGTGCggtagaaaataaattgtttgagaaTAGCACGGATGAGGGAGTATCTTCGATACGAAATTTGTTCAATGAGACTGATGATGGCTTTAGTGgtggtaataaaaataattcctcGGCTGAGTCTTCAAATGCAACATCAAAAGACGTAACCTTAGGTGATAAAAAAGAGAAGCCTTACATGTGCGAAGAGTGTGGATATTCATGTGCCAGAGCAGgaaatttaagaaaacatttgCGCATCCATACAGGAGAGAAGCCTTATGTATGCAAAGAGTGTGGATATTCATGTACTCAAGCAGGACATTTAAAAAGACATTTGCGTACCCACACAGGAGAGAAGCCTTATGTATGCAAAGAGTGTGGATATTCATGTGCTCAAgcagaaaatttacaaatacaTTTGCGTATCCACACAGGAGAGAAGCCTTATGTATGCAAAGAGTGTGGATATTCATGTGCTCATGCAGGAGCTTTGAAAACACATTTGCGTATCCACACAGGAGAGAAGCCTTATGTATGCAAAGAGTGTGGATATTCATGTACTCAAGCAGGACATTTAAAAAGACATTTGCATATCCACACAGGAGAAAAGCCTTACGTATGCAAAGAGTGTGGATATTCATGTACTCAAGCAGGAGATTTAAAAAGACATTTGCGTATCCACACAGGAGAGAAGCCTTATGTATGCAAAGAGTTTGGATATTCAAGTGCTCATGCAGGAACTTTGAAAAAACATTTGCGTATCCACACAGGAGAGAAGCCTTATGTATGCAAAGAGTGTGGATATTCAAGTGCTCATGCAGGAACTTTGAAAAAACATTTGCGTATCCACACAGGAGAGAAGCCTTATGTATGCAAAGAGTGTGGATATTCATGTACTCAAGCAGGACATTTAAGAAGACATTTGCGCACCCACATAGGATAG
Protein Sequence: MIPMPTYLKRYMEWRSSVLESTGENTKMKASTSEPKLTTCEPQPSTSGSKPSTSGSKPSTSGSKPSTSGSKPSTSGSKPSNSGSERSFSSFKPTSGNARLEKQKQRMRRKLEKKRMDRDVEECFRGFSQLEIDESKKNLEKSQLIVDKARALLSDSESDSELIYKKCRQLRRRRKRINYMELSEPEDDAYIWCDLCEKRYLKYCPEHLPLVVIPDNKEKVEGQPLSLSSAPPYVKVASSGIPGAGLGVWTGPEGLPQGVRFGPYTGRFTSKADPRSYYVWRVYTKDRGRRFVDAADPAESNWMRYVNCARNVREQNLQAFQYRGQIYYRTVRNIPGRTELLVWYGPQYAKQLGILVEQYSVPWPIDGEMLLYTCEKCDMSFRSPVSALDHLKLCTVNGEEKPIQKNSDSAVENKLFENSTDEGVSSIRNLFNETDDGFSGGNKNNSSAESSNATSKDVTLGDKKEKPYMCEECGYSCARAGNLRKHLRIHTGEKPYVCKECGYSCTQAGHLKRHLRTHTGEKPYVCKECGYSCAQAENLQIHLRIHTGEKPYVCKECGYSCAHAGALKTHLRIHTGEKPYVCKECGYSCTQAGHLKRHLHIHTGEKPYVCKECGYSCTQAGDLKRHLRIHTGEKPYVCKEFGYSSAHAGTLKKHLRIHTGEKPYVCKECGYSSAHAGTLKKHLRIHTGEKPYVCKECGYSCTQAGHLRRHLRTHIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01086634;
90% Identity: iTF_01086627; iTF_01086634;
80% Identity: -