Oalb033127.1
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- -
- Assembly
- GCA_949825065.1
- Location
- OX463866.1:18914359-18934633[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0086 0.67 11.5 0.8 1 23 257 279 257 279 0.97 2 13 0.0004 0.031 15.7 5.9 1 23 285 307 285 307 0.98 3 13 1.1e-06 8.7e-05 23.8 2.0 1 23 313 335 313 335 0.97 4 13 4.1e-05 0.0032 18.8 0.2 1 23 341 363 341 363 0.95 5 13 0.052 4.1 9.1 0.2 1 23 369 392 369 392 0.91 6 13 0.0081 0.63 11.6 1.0 1 23 399 422 399 422 0.96 7 13 3.7e-05 0.0028 19.0 6.7 1 23 428 450 428 450 0.97 8 13 0.018 1.4 10.5 0.3 1 23 456 478 456 478 0.95 9 13 1.1e-06 8.2e-05 23.8 0.1 1 23 484 506 484 506 0.98 10 13 0.0013 0.1 14.1 0.1 1 23 512 535 512 535 0.97 11 13 2.2e-05 0.0017 19.7 1.3 1 23 542 567 542 567 0.98 12 13 0.00011 0.0084 17.5 0.7 1 23 573 596 573 596 0.96 13 13 0.0001 0.008 17.6 0.7 1 23 602 625 602 625 0.95
Sequence Information
- Coding Sequence
- atggatgtAAATAATGAGGTATTATTACGAAAATTCGATGACAACATTGAGGAGACATTCTGTGCCGATGTGGTGAAGATAAAAGAGGAGAAATTCAGCGATTCGGAAGATGACGAGACACCGATATTGGAAAAAAGACCTCTCGTACAAAGATTATTAGATTATTcgaagaataaaagaaaacagacAGTTGAAGATCGAgcaatatacaataaatcagACGAGGTTGATGTCGGTTTCTCTGAAATTCCgattcaatttgaagaaaacgATAATTTCGTTGGAACTGTGAAGGTTAAGGTAGAAAATGTTTGCTGTGAGTATGAAGGGGACGGGAAggatggatgtgaaagaggggGAGTGGAGAATAACAATGTGGAAGTGAAGAAGGAGCCTCTTCTTTCGAAGGAAGTTGTGATAAAGCAAGAAGTGTTTGACGATCTTCACACTGAGGAAGATATTAATTACGAACCAATAGAAAATCCCGAAGAATGCAAACCCAAGAAAAGAGCTTCGAAAACCGCAGCCACGAAGCTCCCCAAGGTGAAGAAGAAACCTCCAGCAAAGAGAAAGCCGAATAATGGAGAAACGCCTGTAAAAAGAGAGTTGCCTCCAGACGTCAAGATTCCTCCTGAGATCTTAGTTGGAGGACCTGATAGAAGGAAAACTGTGAAACCTATTCCAGAAGCGGAAGCTCTGAGACTGCAAAGCATGGCACAACTGAACTCCAGATTGAGTAGCGGACAGCCGGGCTCCAGGAAGAAAGAGTTCCCCTGCAAGGACTGCAGTCAGCTCTTCCCGCTGCATTCTCTGCTGAAGGCACACTCCATCACGCACCAGGTGGAAACCAGACATAAATGCGCAAAGTGCAGTAAATGTTTCACCCGGGCCCACGATTTAGTCCTGCACGAGAGAGTGCACTCGGGAGAGCGTCCCTTTGCCTGCACACACTGCCCCAAAAGGTTCACGCAGAAGATCAACATGATCCGTCACATCAGGATCCACACAAATGAACGTCCGTTCCTCTGCCACATCTGCGAGGAAGGTTTCATCGACCAGGGGGACCTGGCCAAGCACTTGCGCCTGCACACCGGACAGCTGCCTTTCTTCTGTGTGCTGTGCAAGGAGAGGTTTGCTGTCTTGGAGGAGTTACGAACACACACGGCTGAGAGTCACACTCCCACAGAGGGCCGTCACCATTGTGGGGTGTGCGGGGCCACCTTCATCGACCGCGCCAGCAGGAAGGAGCACCTCATCACAATGCATCAGGAGCAGAAGCCGTTCATCTGCCATCACTGCTCCAAGAGcTTCAAAGTGAAAGTTCATCTTATAAAACACATGACAGTCCACGACGGATCCCGCCCGCACCAGTGTCCGTACTGTGCTAAGGCCTTTGCCTCGGTGGGAGGCAGACGCTTGCACGTGCTGCGTCACGCCGCGGTGAAGCCGTATCAGTGCCCGGAGTGTGGGGAGGCGTTCTATAGCCGCAGCCTGCTCGGTAGGCACCTCAGGGCGCACTCCACAGCGAGGCCGTTCCCCTGTCCGAGGTGTGCGCTGGCGTTTAAATCGGCTGATTCAAGACGGCGACATATTAAGGTTGTCCACGAACGTAGTCTAAATGAGTACAAATGCGAATTTGACGGATGCAACGAAACATACTCGGCTAAAAGCAACATGCAGAGACACATGCGTAGCTTCCATTACGGCCTCAAGCCCTTCCAGTGCGGGCAGTGCACTGCGAGCTTCACCAGTAAGAGTTCCCTGCGAGGGCATCTGGCCTCCAAGCACGATGGGCAAAAGGACTTCCCTTGCCAGCACTGCGAAAGAGAGTTTGTGGACGCCAAGACGTTGAGGAGACACGTTGCTGTTAAACATACAGCGACGAGTAAACATTCAGCGACAGGTAAACGCACAGCGACAGGTAAACGCACAGCGACAAGTAAACGCACAGCGACAAGTAAACGCACAGAGACAAATAAACGCACAGCGACGAGTAAACGCacgactaaaaaaatatttgttcgaaTTAAGATAGAACCGTCCTAG
- Protein Sequence
- MDVNNEVLLRKFDDNIEETFCADVVKIKEEKFSDSEDDETPILEKRPLVQRLLDYSKNKRKQTVEDRAIYNKSDEVDVGFSEIPIQFEENDNFVGTVKVKVENVCCEYEGDGKDGCERGGVENNNVEVKKEPLLSKEVVIKQEVFDDLHTEEDINYEPIENPEECKPKKRASKTAATKLPKVKKKPPAKRKPNNGETPVKRELPPDVKIPPEILVGGPDRRKTVKPIPEAEALRLQSMAQLNSRLSSGQPGSRKKEFPCKDCSQLFPLHSLLKAHSITHQVETRHKCAKCSKCFTRAHDLVLHERVHSGERPFACTHCPKRFTQKINMIRHIRIHTNERPFLCHICEEGFIDQGDLAKHLRLHTGQLPFFCVLCKERFAVLEELRTHTAESHTPTEGRHHCGVCGATFIDRASRKEHLITMHQEQKPFICHHCSKSFKVKVHLIKHMTVHDGSRPHQCPYCAKAFASVGGRRLHVLRHAAVKPYQCPECGEAFYSRSLLGRHLRAHSTARPFPCPRCALAFKSADSRRRHIKVVHERSLNEYKCEFDGCNETYSAKSNMQRHMRSFHYGLKPFQCGQCTASFTSKSSLRGHLASKHDGQKDFPCQHCEREFVDAKTLRRHVAVKHTATSKHSATGKRTATGKRTATSKRTATSKRTETNKRTATSKRTTKKIFVRIKIEPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -