Basic Information

Insect: Odontocerum albicorne
Gene Symbol: -
Assembly: GCA_949825065.1
Location: OX463848.1:11007496-11009745[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00023 0.018 16.5 3.2 1 23 128 150 128 150 0.98

2 14 0.4 31 6.3 0.8 3 21 158 176 156 179 0.86

3 14 0.022 1.7 10.2 2.2 2 19 221 238 220 240 0.95

4 14 7.9e-06 0.00061 21.1 0.9 1 23 345 367 345 367 0.96

5 14 5.3e-07 4.1e-05 24.8 3.0 1 23 374 396 374 396 0.98

6 14 3.2e-06 0.00025 22.3 2.0 2 20 402 420 401 423 0.92

7 14 0.0088 0.69 11.5 0.3 1 23 429 452 429 452 0.93

8 14 8.3e-05 0.0065 17.9 3.1 3 23 466 486 465 486 0.98

9 14 0.043 3.4 9.3 0.1 1 23 492 514 492 514 0.95

10 14 1.2e-06 9.6e-05 23.6 0.3 1 23 521 543 521 543 0.96

11 14 1.9e-05 0.0015 19.9 0.5 1 23 549 571 549 571 0.97

12 14 2.3e-06 0.00018 22.8 1.8 1 23 577 599 577 599 0.96

13 14 2.7e-06 0.00021 22.5 0.1 1 23 605 627 605 627 0.98

14 14 0.041 3.2 9.4 0.1 1 23 632 655 632 655 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00023	0.018	16.5	3.2	1	23	128	150	128	150	0.98
2	14	0.4	31	6.3	0.8	3	21	158	176	156	179	0.86
3	14	0.022	1.7	10.2	2.2	2	19	221	238	220	240	0.95
4	14	7.9e-06	0.00061	21.1	0.9	1	23	345	367	345	367	0.96
5	14	5.3e-07	4.1e-05	24.8	3.0	1	23	374	396	374	396	0.98
6	14	3.2e-06	0.00025	22.3	2.0	2	20	402	420	401	423	0.92
7	14	0.0088	0.69	11.5	0.3	1	23	429	452	429	452	0.93
8	14	8.3e-05	0.0065	17.9	3.1	3	23	466	486	465	486	0.98
9	14	0.043	3.4	9.3	0.1	1	23	492	514	492	514	0.95
10	14	1.2e-06	9.6e-05	23.6	0.3	1	23	521	543	521	543	0.96
11	14	1.9e-05	0.0015	19.9	0.5	1	23	549	571	549	571	0.97
12	14	2.3e-06	0.00018	22.8	1.8	1	23	577	599	577	599	0.96
13	14	2.7e-06	0.00021	22.5	0.1	1	23	605	627	605	627	0.98
14	14	0.041	3.2	9.4	0.1	1	23	632	655	632	655	0.95

Sequence Information

Coding Sequence: ATGGACGGTGAAGAAGTGATCTCGGTAGACCGCATTTGTCGAGGCTGTCTCGCCGAGAAACTGGACATGCAACCATTGTTTACAGTGTACGACGGGCCACTGCTGCTGCCTGTGCCGCGCCTGGCGCAGCTGCTGGCCGCCAGCACTCGGTTGCGGCTCCGGGAAGATGACGGCCTTCCGCGGCAGCTATGCGCGAATTGTACAGAGCGCCTATGTGCCGCTCATTCTTTCCAGTCCATGTGCGAGCAGTCGGACACCAGGCTGAGGCTGTACGCGGCGCGCCGAGCCGGTGCCGGCTGTAAGTTGGAGGGAGACGAATCAGATGCATGTGGTAAGAGCGACAGAGGCTCGCAGACCGCGCATGAGAAGGGTTTGCGCGCCTTTAACTGCCCCGAGTGCCAGAAGAAGTTTAAGACACTGCTAGGGTTGAGCCATCATTTGAAACGGCACATGTGGGAGAGCAGCGTATGTTGTCTGCACTGCGAGAATGTGTATGCTAACACGGACAGCCTGGCGCGACACAGTGAAGCGGCACACGGTGTTCCGCTATCAAGCGCCCACCAACAAGGCACCGAGGAAAATGAAGACCATTGCGGAACATGCGACATGACCGCGTGCCGCCTGCGCGCCCATCGTGACCTGCGCCGATCCGGCAGCATCACCTGTGAGCGCTGCCAACGCCGTTTCTCTAAACTCAAGCACTACAGACGACATTTCGGTGAAGGGCGTTGCGATGCATCACCGCCACTTAAAGAGGAACCTGTCCCCGCCAAGGAGGAAGCAGCTCCATGGGAATCCCTGCGCATTAAAGAGGAACCGCCCGAGCTTATGGGGTTGCAGGGTTTCCCTGACCTCTCTGACGATGGCCATTCAGACTTCCCGCTGGATGAGTTGCCGCCCGTGAAGGAAGAGATGCGTAGCGACGACTCTGATTACATTCCCATCAAGCCGGGCAAGAAGAAAGCGGGCCGCAGGATGCGCTCCAAAGgcgtaaagagagaaaatgaAGGGAGTGCGGATGGGAGGGAAAAACATGCGTGCTCGTTATGCCCCCGTGTCTTCTCGTCTAACGCGCATTTAGAAGTGCACATGGCCAAACACGCTGGCCGAAGTGTACCCTTCACATGCGGTGTCTGCAAGAAAGGCTTCAGTCGCAGCAGCCACCTTAAGCGGCACCAGCTGATCCACTCGGAGGAACGTCTGCAGTGCCCATCCTGCGACAAGAGTTTTAGTCGCAAAGACCACCTGGAGCGGCACCAGTGGCGGCACACTGGCGTCAAACTGCACCGCTGCGCTGCTTGCCCGAAAGAGTTTGTTAAGGCCGAGGATCTCGCACGGCATGGCAAACTCAAACACGGCGAGACACCACCACAGCGCAGCCCCAAGGTAGCATTTTGTTCTATGTGTGACCGTGGCTTCACTACACACAAGTATCTTGAGCTACACATGCGCTCGCATGGTGCAGACCGCTCCTACCCATGCAAGGCGTGTGACAAAAAATTGGAGTCCAAGGAAGCATGGCGTGCACACACTGCGTGGCACCGTGCACAGGAGCGTCCTTTCCTGTGCTCTGAGTGTGGACAAGGCTTCACACGTGCTGCTTATCTTACAGTACACATGCGCCGCCACCGTGGAGAGAAACCTTTCTGCTGCGGTTTCTGTGGCAAAGGTTTTCCACGGCCCTCAGATCTAGCAGTACACGAACGCTATCATACGGAGGATAAGCCACACGCATGTGCCGTGTGTGGCAAGGCCTTCCACCGCCAATACAACCTCAAAGTGCACCTGCGTGTTCACACAGGCGAACGGCCTTACGCTTGCCCCTACTGCGCGCGGGCCTTTACGCAACCCAACGACCTCAAAGCGCATGTCCGCCGTCACACAGGGGAGCGCTTTGCATGCCCTGTATGTGGGGCTGCTTTTTTGCATGGTTATCTGCTATCTCAGCACCAGCGCGCTGCGCATGGCATTGATGCTGCCTCGCACATCCGACGTCTAGAGAAGCACCCACCACCTCCAGGTGCGCCGCCGCCTAAGCCACGAGAGCCACCACGCCGGGGGCGTGCGCGCACTGCACATCTTGAACTTGCCGCACACATGGCCTCCATTTTGGCACGAACGAAGGCACAACAGCAGCAACCTGAAGGGGTGCCGCCCTCCCTCACCTCTGCCCTTCCGTCAGTTCCTGTTCCCCCACATCCCTTGCAGCCACATGTGCTGCCTGGTTCTGCTGCCCCACTCCCCTCATGA
Protein Sequence: MDGEEVISVDRICRGCLAEKLDMQPLFTVYDGPLLLPVPRLAQLLAASTRLRLREDDGLPRQLCANCTERLCAAHSFQSMCEQSDTRLRLYAARRAGAGCKLEGDESDACGKSDRGSQTAHEKGLRAFNCPECQKKFKTLLGLSHHLKRHMWESSVCCLHCENVYANTDSLARHSEAAHGVPLSSAHQQGTEENEDHCGTCDMTACRLRAHRDLRRSGSITCERCQRRFSKLKHYRRHFGEGRCDASPPLKEEPVPAKEEAAPWESLRIKEEPPELMGLQGFPDLSDDGHSDFPLDELPPVKEEMRSDDSDYIPIKPGKKKAGRRMRSKGVKRENEGSADGREKHACSLCPRVFSSNAHLEVHMAKHAGRSVPFTCGVCKKGFSRSSHLKRHQLIHSEERLQCPSCDKSFSRKDHLERHQWRHTGVKLHRCAACPKEFVKAEDLARHGKLKHGETPPQRSPKVAFCSMCDRGFTTHKYLELHMRSHGADRSYPCKACDKKLESKEAWRAHTAWHRAQERPFLCSECGQGFTRAAYLTVHMRRHRGEKPFCCGFCGKGFPRPSDLAVHERYHTEDKPHACAVCGKAFHRQYNLKVHLRVHTGERPYACPYCARAFTQPNDLKAHVRRHTGERFACPVCGAAFLHGYLLSQHQRAAHGIDAASHIRRLEKHPPPPGAPPPKPREPPRRGRARTAHLELAAHMASILARTKAQQQQPEGVPPSLTSALPSVPVPPHPLQPHVLPGSAAPLPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -