Oalb021071.1
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- -
- Assembly
- GCA_949825065.1
- Location
- OX463852.1:37806511-37820354[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1e-05 0.00079 20.7 2.6 1 23 117 139 117 139 0.96 2 13 0.00035 0.027 15.9 1.4 1 23 147 169 147 169 0.97 3 13 0.00091 0.071 14.6 0.3 1 23 176 198 176 198 0.97 4 13 2.2e-05 0.0017 19.7 1.6 1 23 218 240 218 240 0.98 5 13 2.4e-06 0.00019 22.7 1.7 1 23 249 271 249 271 0.98 6 13 1.7e-05 0.0013 20.1 3.2 1 23 277 299 277 299 0.98 7 13 6.7e-07 5.2e-05 24.5 2.2 2 23 306 327 306 327 0.98 8 13 1.9e-06 0.00015 23.0 0.8 1 23 333 355 333 355 0.96 9 13 0.0055 0.43 12.1 2.7 1 23 361 383 361 383 0.93 10 13 3.3e-05 0.0026 19.1 1.5 1 23 389 411 389 411 0.97 11 13 0.015 1.2 10.8 7.8 1 23 417 439 417 439 0.98 12 13 4e-07 3.1e-05 25.2 1.9 1 23 445 467 445 467 0.99 13 13 0.0024 0.19 13.2 0.5 1 20 473 492 473 495 0.94
Sequence Information
- Coding Sequence
- ATGCCCGTTCTAAAGCAggtaATAAAGGAGGATGGATTACCTCAGAAAATATGCGAAACATGTATAGAAGGTTTAACATCAGCATATGCATTTAGAACTCAGTCTGAAAGAAACGATGTTATGCTTCGTGGTATATTGACTACCGAGAGTGAATACAATGACATAAAAGTAAAACAGGAACCTGAAGTTCAGCTCGAAATAGAGGACGTTAAACAAGAAGAGGAAAACGAAGAAACTTTTGATGACTACGTTGATGATGCCGATAATGATGCCGATTATTCCCCTGAACAGCCCGtggaaaaggaaaagaagaaaaagaaatttaagaaaaaagaaaagcgcGGAGAACACGCGTGTACAGAATGTGgtaaacaattttataagtCGTCTAGATTGGAAAAGCATATGAAAGttcatcttaaaataaaaaaagaattgcaTACTTGCGAAGTTTGCAAGAAGACTTTTTTGAAACTCTCCGGCCTAAATCGGCACATGGCAATCCATGATGCTGAAAGTAAACCCTTCGAATGTTCACAATGCTTGCAGAGGTTCAAAAGAGAAGGTCTCCTTTTGCGGCATGTCGCCATCCACACTACGGGTATCGATAGTCAAATTATTGAGAGCAAAGAGTCGATCACGCCTACCTCATTCAACTGCGAGGATTGTAGCATGGTATTTGAATCTCGACATTCTTTGTCTAGCCACATGAGAATACACAAAGAAAAAGTGAAACAGAAAAACTTTTCCTGTAATATCTGCGAGAAGAAGTTCTCTTCTAAGAACCCTCTTAATAGACATATGAAGCTACATTCGGAAGATAAACCTCACAAATGCACCATGTGTGAAAAGCGTTACTCCCGCCAGGATCAATTGCTGGATCACATCAACAAACATAATGGCGTCAAGCCTAATGTATGTCCATACTGTAGCAAAGCATTCTCCCAACTTTGCAATTTGAAGGATCACATGCGCACCCACACAGGTGAGACCCCGTACTTGTGTTCGCAGTGTGGCAAAGGGTTCAACAATGGTTCCAACCTGCGTCAACACATGATGCGTCACACGGGTCTTAAACCTTTCTCATGCAACCTGTGTCCTAAAAGGTTTTCCACTaaagGTCAGATGACATGTCACGTGGGAACACACTCTGGAGTGCACCCTTTTGTTTGTGACACGTGCGGGCATGCGTTCACCAAACCAAATTCTCTTAAAAAGCATAAGCTTATTCATCTGGGAGTTAAGCCACATGAATGTGATGTCTGTAGTATGAAATTCTCCTGTAAGGACCACTTGAAGCGGCATTACAGGATCCACACCGGAGAGAAGCCCTATAAGTGCACATACTGCGACCGTGCCTTCACGCAGAGCAACGATCTGGTTAAGCACACGCGCTCGCATATCGGAGACAATATTTACAAgTGCACTGTTTGTCTGGAGAGCTTCAGGCTTTTAAGTGAACTCAAGAATCATTATCCAATACATTATCTTGGAAAAGAAGGCAGTGAATCAAGCATGTTTTCTCAATCTCAGTCAGAGGACTCCAAGACGTTGATATCTTTTGATAAACATCTGGATAAGAGAGCTATTGAGCAAATGGTATTGAACTCTGTACCTCAAAATTTGGACAAAAGAGTTTTAGAACAAATGGTATTAAATTCGAGTGGGAATTTAGATAAAAGAGCGATAGAACAGATGGTATTGAATGCAGGTAGTGCAAATTTAGATAAAAGAGCAATAGAGCAACTTGTTAGTTTGAATTCTGGAAATTCAGATGTAGATAAAAGGGGAATAGACCAGATGGGACTGAATTCTAACAGTTCGTCTGACTTAGAAAAACGAACCATTGAACAAATGGTTATGAATCCTGGCAATTCAAATTTAAGCAAGAGAGGTATTGATCAAATGGTTTTAAACTCTGGCAATACGGATTTTCAACAAGTTGAAACTAAGAATGAGCCTAAAGACGTGGAGAATATGAATTCTCCAGATGTCAAGATATATGTTGTTGACGCTTCCTTTTCCGGGTCATCACTTGAGAAATCTATGCAATAG
- Protein Sequence
- MPVLKQVIKEDGLPQKICETCIEGLTSAYAFRTQSERNDVMLRGILTTESEYNDIKVKQEPEVQLEIEDVKQEEENEETFDDYVDDADNDADYSPEQPVEKEKKKKKFKKKEKRGEHACTECGKQFYKSSRLEKHMKVHLKIKKELHTCEVCKKTFLKLSGLNRHMAIHDAESKPFECSQCLQRFKREGLLLRHVAIHTTGIDSQIIESKESITPTSFNCEDCSMVFESRHSLSSHMRIHKEKVKQKNFSCNICEKKFSSKNPLNRHMKLHSEDKPHKCTMCEKRYSRQDQLLDHINKHNGVKPNVCPYCSKAFSQLCNLKDHMRTHTGETPYLCSQCGKGFNNGSNLRQHMMRHTGLKPFSCNLCPKRFSTKGQMTCHVGTHSGVHPFVCDTCGHAFTKPNSLKKHKLIHLGVKPHECDVCSMKFSCKDHLKRHYRIHTGEKPYKCTYCDRAFTQSNDLVKHTRSHIGDNIYKCTVCLESFRLLSELKNHYPIHYLGKEGSESSMFSQSQSEDSKTLISFDKHLDKRAIEQMVLNSVPQNLDKRVLEQMVLNSSGNLDKRAIEQMVLNAGSANLDKRAIEQLVSLNSGNSDVDKRGIDQMGLNSNSSSDLEKRTIEQMVMNPGNSNLSKRGIDQMVLNSGNTDFQQVETKNEPKDVENMNSPDVKIYVVDASFSGSSLEKSMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -