Oalb030693.1
Basic Information
- Insect
- Odontocerum albicorne
- Gene Symbol
- -
- Assembly
- GCA_949825065.1
- Location
- OX463863.1:4848842-4855399[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.003 0.24 12.9 4.0 1 23 101 123 101 123 0.98 2 24 0.00048 0.037 15.5 3.6 1 23 170 192 170 192 0.98 3 24 0.012 0.91 11.1 0.2 1 23 197 219 197 219 0.97 4 24 0.0016 0.12 13.8 1.7 3 23 227 247 225 247 0.95 5 24 0.03 2.3 9.8 3.8 1 23 253 275 253 275 0.98 6 24 0.0016 0.12 13.8 0.8 2 23 282 303 281 303 0.97 7 24 0.012 0.91 11.1 2.8 1 23 309 331 309 331 0.96 8 24 0.011 0.83 11.2 1.1 1 23 337 359 337 359 0.98 9 24 0.00076 0.059 14.8 1.4 1 23 365 387 365 387 0.98 10 24 8.3e-05 0.0065 17.9 0.9 1 23 393 415 393 415 0.97 11 24 0.0081 0.63 11.6 3.3 1 23 421 443 421 443 0.98 12 24 0.14 11 7.7 4.6 1 23 466 488 466 488 0.98 13 24 0.0016 0.12 13.8 2.3 1 23 494 516 494 516 0.98 14 24 0.00013 0.01 17.3 0.8 1 23 522 544 522 544 0.98 15 24 6.7e-05 0.0052 18.2 0.3 1 23 550 572 550 572 0.98 16 24 0.0041 0.32 12.5 6.2 1 23 578 600 578 600 0.98 17 24 8.7e-05 0.0067 17.8 1.2 1 23 606 628 606 628 0.98 18 24 0.0002 0.015 16.7 1.9 1 23 634 656 634 656 0.95 19 24 0.0013 0.1 14.1 5.2 1 23 662 684 662 684 0.98 20 24 4.9e-05 0.0038 18.6 0.4 1 23 704 726 704 726 0.98 21 24 3.9e-05 0.003 18.9 2.4 1 23 732 754 732 754 0.97 22 24 0.00061 0.047 15.1 2.4 1 23 760 782 760 782 0.98 23 24 0.00042 0.032 15.7 1.8 1 23 788 810 788 810 0.95 24 24 0.00018 0.014 16.8 3.7 1 23 816 838 816 838 0.98
Sequence Information
- Coding Sequence
- ATGGACAAGAAAAGCAGTTATTCGAAAGGAACTGTAGCCGGCAAAATGTTTGAAGTAAGAAACAAAGTTGTAATTAAAAAGGAAGAAACTCAGATCAGCGAGGGAACGAATCGAGATAACGGCTGTAATATGCTGGAGCCTGAGGAGTATTACTTAGAAGAGAAGCCTGACATAGTATTAGACGGTATTCGAGGGCAAGATGATAAATTAGACGTAAGTCTCTGCGAGATAAAGATAGAGAAGGAAGACTCGAGCGATGAAGATGAAATACCTCTTCAAATTCACGCAAAAAGAAAAGAGTTCGAATGTTTAAAATGTACGTACACCTGTAGAACTTTATCTGATTTAAAACAACACGAATCGACACACGGTAAAGTGAAACGTGTACGTAAAAGAAAAATCGACAAAATATTAGAAACAGACGATGAATCGATAACATCTTTCGATAAAACGTTACGAAAATCAAAAAAGCATAAGACGTCTTTGTCGAATAAGAAAAATAGAAGTTATTCGTGCAACGAATGTGAATACACGTGCGAATCGAAATCCGGTTTAAGTAGACACAGGCAAAAACATTCTGGTAAAGTATATTCGTGCGATATATGCGAATATAAAACGGTACGAATCGATTTGTTAAGGGCGCACTCACTCAAGCATTCCGACGAGAAACCGCACCTTTGTAATTTGTGCGGACAAACCTTTAAGTTGCTCGCTTCGTTGAAGACTCATAAAATGGTACACGaagggataaaatcgttttcgTGTAACGAATGCGATTATTCGACACATTTGATGTCGAGTTTGAAACGTCACAAATTGAGACACGTCGACGTTAAAAGTCTCGTCTGCGAAACGTGCGGATTCGCTTGCAAAGATCCAAGAGGTTTGATATCGCACAAGAGACGTCACGTCAAGGAAACGTCGCACGCTTGCGTCTATTGCGACTTTACCTGCGATAAACTTTCGAGTTTGAAGATACATCAACTCGTTCATCCCGACGCTCGTCCGTATACGTGTGATTTGTGCGAGTTCGCTTGCAGGCAAGTCGCCGATTTGAAAGAACATAAGAAGATTCACGCTAAAGATCGCCCTTTTCAATGTCACCTGTGCGAATTCACGAGTATGACTTCGGGAAATCTTAAAGCGCATCAGTTGATACACGCCGGTATTACTCGATTTGTCTGTGACGAGTGCGGACAGGCGTTTAGATTAAAGTATACACTGAAACAGCATAAGTTGAATCATTCCAAAGACAATGTCTACAAGTGCGAAGAATGCGACTTCACTTCACATCGAATGAAGAATCTAAATGCCCATAAACTCCGTCATCTCGGCGTCAAAAGACAACTCGGAGGTCTTATATCTCATAAAAAGAGACACGCGAAAAGCAACGATCACAAATGTGATCTTTGCGATTTCGCTTGTGGTAGAAGGTCTATACTTAAAAAGCATAGATTGACACACGGCGCCGCCGGGAAATATTGTTGCGGTATTTGTGAATATTCCACGGCGAATCAGTACACTTTAAAAATGCATCGTTTAACACACGAAAAAGTTAAACCGTTTCAATGCGGCGAATGCGATTATTCGACGAGCACTTCAGCCGGTTTACGAACACACCAGTTCAAACATAGCGGAATATCACCGTACGTCTGCGAAATGTGCGGCCAAGCGTTTCGCAGTATGCCGAATCTTAAAATGCATAAACTAAAACATTCCGCTCAGAAGATGTTCCAATGCGACAAGTGTTCTTACTCGTGTTACAGAAAAGATTATCTTAAAGAGCATAAGATGCGTCACGAAGGTATCAAAAGATATTCGTGTAACGAGTGCGATTATTCCAGCACCGAATCTGGTAATCTACGAAGGCACAAACTGAAACATTCGTCCGTAAAATCGTTCCTCTGCGACGAGTGCGATTACGCGTGTCGTCGTctggataatttaaaaaagcacAAATTAGTTCATTCGCCGATTCGTCCGTTTTCGTGCGAATTTTGCAATTACACCTGCCGTCAGGCGAACAATCTCAAAATGCACAAACGTTCGCACGGTATCGTAGATCCAGATTCCAAAGACACGACGAGAGATGGCGATAATACGAAAACGTATCCTTGCGAAGTATGCAACCGGGAGTTCAGAGAGTTGTCTTATCTTAAGGCccataaaaaaattcacgacgatgttaagaaatattcatGCGACGTGTGCGGGTACAGTTTTAGACAGTATATCCATTTGAAAACTCATAAATTGATTCACGACGGACTTAAACCGTTTCAATGTTCGATGTGCGAATACTCTTGCCGTCAGCTGGGCGGATTGAAGAAACATCAGTTGTTACATTCGAACCTGAAGCCTCATGCGTGCGACAAATGCGAATATACAACAAGGGACAAGGGAAATTTGAACAGACACAAACTGATACATACCCAGATTAAACCGTACTCGTGTCCTTTTTGCGACTTCACTTGTAGACAGCCATCGGCTCTAAAGAGTCATAAAAAGAGGCACGTCGAAGCGAAAGGGGGCGAACTCCAAGTTGCTTCGACGTATTCTGAAGACAAAGATATGAACTTTGGTCCAAAGCCACACAATACCTGCAAACTGCTCAAGCAATCACGGAAAGATGCGTGCCGGATAACACGAGAAGAGACTGCAAACAACATTAATGGATTCACTCTCTAA
- Protein Sequence
- MDKKSSYSKGTVAGKMFEVRNKVVIKKEETQISEGTNRDNGCNMLEPEEYYLEEKPDIVLDGIRGQDDKLDVSLCEIKIEKEDSSDEDEIPLQIHAKRKEFECLKCTYTCRTLSDLKQHESTHGKVKRVRKRKIDKILETDDESITSFDKTLRKSKKHKTSLSNKKNRSYSCNECEYTCESKSGLSRHRQKHSGKVYSCDICEYKTVRIDLLRAHSLKHSDEKPHLCNLCGQTFKLLASLKTHKMVHEGIKSFSCNECDYSTHLMSSLKRHKLRHVDVKSLVCETCGFACKDPRGLISHKRRHVKETSHACVYCDFTCDKLSSLKIHQLVHPDARPYTCDLCEFACRQVADLKEHKKIHAKDRPFQCHLCEFTSMTSGNLKAHQLIHAGITRFVCDECGQAFRLKYTLKQHKLNHSKDNVYKCEECDFTSHRMKNLNAHKLRHLGVKRQLGGLISHKKRHAKSNDHKCDLCDFACGRRSILKKHRLTHGAAGKYCCGICEYSTANQYTLKMHRLTHEKVKPFQCGECDYSTSTSAGLRTHQFKHSGISPYVCEMCGQAFRSMPNLKMHKLKHSAQKMFQCDKCSYSCYRKDYLKEHKMRHEGIKRYSCNECDYSSTESGNLRRHKLKHSSVKSFLCDECDYACRRLDNLKKHKLVHSPIRPFSCEFCNYTCRQANNLKMHKRSHGIVDPDSKDTTRDGDNTKTYPCEVCNREFRELSYLKAHKKIHDDVKKYSCDVCGYSFRQYIHLKTHKLIHDGLKPFQCSMCEYSCRQLGGLKKHQLLHSNLKPHACDKCEYTTRDKGNLNRHKLIHTQIKPYSCPFCDFTCRQPSALKSHKKRHVEAKGGELQVASTYSEDKDMNFGPKPHNTCKLLKQSRKDACRITREETANNINGFTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -