Oalb034619.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Odontocerum albicorne
Gene Symbol
-
Assembly
GCA_949825065.1
Location
OX463868.1:13485961-13494995[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0062 0.48 12.0 1.4 1 21 276 296 276 297 0.93
2 17 5.4e-05 0.0042 18.5 0.4 2 23 345 366 344 366 0.95
3 17 0.00015 0.012 17.1 0.7 1 20 372 391 372 394 0.94
4 17 2.2e-06 0.00017 22.8 1.4 1 23 400 422 400 422 0.97
5 17 2.5e-05 0.0019 19.5 1.4 1 23 428 450 428 450 0.97
6 17 0.11 8.2 8.1 1.6 2 21 456 475 456 477 0.94
7 17 2.1e-06 0.00016 22.9 1.2 1 23 483 505 483 505 0.97
8 17 2.1e-05 0.0016 19.7 0.7 1 20 511 530 511 533 0.94
9 17 0.00022 0.017 16.6 0.4 1 23 539 561 539 561 0.97
10 17 9.5e-06 0.00074 20.8 1.4 1 23 567 589 567 589 0.95
11 17 9e-06 0.0007 20.9 0.1 1 23 595 617 595 617 0.98
12 17 0.00026 0.02 16.3 0.8 1 23 623 645 623 645 0.98
13 17 1.5e-07 1.1e-05 26.5 0.4 1 23 651 673 651 673 0.95
14 17 1.9e-06 0.00015 23.0 0.5 1 23 679 701 679 701 0.99
15 17 2.2e-05 0.0017 19.7 1.3 1 23 707 729 707 729 0.98
16 17 0.038 3 9.5 0.2 1 23 735 757 735 757 0.97
17 17 0.0041 0.32 12.5 3.8 1 23 763 785 763 785 0.98

Sequence Information

Coding Sequence
ATGGCGTCCCTCAGTGGCGTCCAAATTCGTGCAGACATTTCGGATATTTTAATTTCAGGTACAGACACGACAGATATAAACGAAATGTTCGTCTCTAAATTCTGTCGTGGATGCCTGTCGACAGACGTGAATATGGTCTGCCTCTCGCAAAGCGAAGACTTTCTATTTGAACTATTGACAGCTTCAAAGCTTCCCGAAGGTCCAGGCACCAGCTGGCTCTGCTACCTCTGCGCCCACACCATGAAGAAGCTGTCTACGTTCCGTGACATCTGCACCAGAGCTGACAACGTCCTCCGGGAGTACTACACGAGGCATCCCGTCATGGATAAGATTGACAtaaacttcattaaaaataaacgagagaacattttaaataaccaaCCGTCAATATCCAACACACTTTGCATAGACATACTAACGTACGAATCCGATTCTCCCAGTGACAGTCGAGTGAGTGTAGTCTCCTTCAATCACGGCTTTGAAAATTCAAAGAACTTCTCTGAAGACATGTCGATCTTGGAGAAAAACATCAAATTGGAAGATTTAGAAGTCGGCACGAATCTGGATAAGGAATTCTCCGTGTACGAAGACATCGGTGGTAACGATTATGATGAAGATTTGAACGATAGGGATAACACGTTTGATATCCTCATTGTAGAAGACATTAGTTCGAGAAAGGGGTACATAGAACCTAAGGAAGAGAAAATGGACCTGATTGAAGATGACGCGAGATCTGGAAGGGAGAGTGTTAGGAGTAACGTCAAGGCTGAGGGTGTCACGGATGGAGAAAGCGATgACAATACGACTTTAGACTTCAACTGCTCATTCCGTTGTAAGTACTGTGAGGCCACTTTCACCAAGATGGGGCATCTGTCCTCGCACAGTAAGGTCTGCAAGAAGCGCAAGGCCCGTAAGAGAGCCAACAAGCTGAACAAGCAGGATCCGGAGAGGAGGAGGGGGAAGACTCTGGACAAACTGAAGGCTGAACTGGAAGAACAGAAAAGGGCCGAGGAAGGGAGAAAGAACAATCTTAGTTGTGAAGTTtgtaacaaaacatttaaaataccaAGCGAACTGACACGGCACAGTGTGACACATACGGACCATAAACCGTATCCTTGTGAAAAGTGTAACCGTAGTTTCAAACTACCATCGCAATTAAGGTCCCACAAGTGGATACATATGGATAAAAAACCTCATGTCTGCGAGATTTGCGGGCGATCCTTTCCGCACCCGTCTTATTTGCGAATTCACAAACGCGGCCACACTGGAGAACGTCCGCATTCGTGCGAAATTTGCGGGAACGTCTTTAAAACTATTAGCAATTTGAATTCGCACAAGAAAATTCACGGGGGACTCAAGCCGAAATGCGAAATTTGCGGGGCCAAGTTTCAAACAGGTAATCAGCTTAAAGAACACGCTCGATGTCACACTTCCGAAGGTCCTTATTCGTGTCAGGAGTGCGGTAAAGTATTCCAGCATCCTAGTTACTTGAAACGGCACGGTTTGGTGCACTCTTTCATTAAAGCGTTCTCGTGCGAACAATGTGGAAAGTCATTTAAAAGAGAGACGGAACTTAAAGCTCACAAATGGATTCACGTGGATTCTAAACCGTATGTGTGCGACGAATGTGGCTTATCGTTCCAGTATGAATCTTATCTCAAGTTACATAAAATGGGGCATAGCGGAGAAAAACCACATTCGTGCGACCAGTGTGGGAAAGCATTCAAAACGGTAAGCAATTTGAACGCGCACAAAGTGAGACACAGTGGATTGAAATTGTTCAAATGTGAGATTTGTGGGAAAAGTATAAAGAGTGCCGGACAATTGAAGGAACATTTGTTGATACACACGGGAGAGCGTCCGTTTTCTTGTGATGTATGTTTCAAGGCGTTCCGTCGCGGCGTAACTTTGAAGATACACAAAAGAATACACACCGGCGAGAAGCCTTTCCTCTGTAAAGAGTGCGGGAAGTCGTTCCGTCGTCAGGGTGAACTTATCGCTCACACACGTGTTCACACGGGTGAACGTCCTTACACGTGCGACATTTGTGGTAAATCCTTTGCCAGCAATGGTACTTTTCTGTCTCACAAGCGGGTCCACACAGGTGAGAAGCCGTATCATTGTGCCACGTGTGGGAAATCTTTTACGGGCGCCAGTTATTTGAAGATTCATAACCGTATTCACACCGGAGAAAAGAACTACGCGTGTGATGCTTGCAGCTATCGGTGCATTAGTCTTGCAGCGCTCAAGGCTCATCGGATGATCCACACTGGCGAAAAGCCTTATGCCTGTGACCTATGTACGTATCGTTCATCCACATCTAAGCATTTGAGAAATCATAAGCTTACACATAATAAGACTCCGTACTTTTAA
Protein Sequence
MASLSGVQIRADISDILISGTDTTDINEMFVSKFCRGCLSTDVNMVCLSQSEDFLFELLTASKLPEGPGTSWLCYLCAHTMKKLSTFRDICTRADNVLREYYTRHPVMDKIDINFIKNKRENILNNQPSISNTLCIDILTYESDSPSDSRVSVVSFNHGFENSKNFSEDMSILEKNIKLEDLEVGTNLDKEFSVYEDIGGNDYDEDLNDRDNTFDILIVEDISSRKGYIEPKEEKMDLIEDDARSGRESVRSNVKAEGVTDGESDDNTTLDFNCSFRCKYCEATFTKMGHLSSHSKVCKKRKARKRANKLNKQDPERRRGKTLDKLKAELEEQKRAEEGRKNNLSCEVCNKTFKIPSELTRHSVTHTDHKPYPCEKCNRSFKLPSQLRSHKWIHMDKKPHVCEICGRSFPHPSYLRIHKRGHTGERPHSCEICGNVFKTISNLNSHKKIHGGLKPKCEICGAKFQTGNQLKEHARCHTSEGPYSCQECGKVFQHPSYLKRHGLVHSFIKAFSCEQCGKSFKRETELKAHKWIHVDSKPYVCDECGLSFQYESYLKLHKMGHSGEKPHSCDQCGKAFKTVSNLNAHKVRHSGLKLFKCEICGKSIKSAGQLKEHLLIHTGERPFSCDVCFKAFRRGVTLKIHKRIHTGEKPFLCKECGKSFRRQGELIAHTRVHTGERPYTCDICGKSFASNGTFLSHKRVHTGEKPYHCATCGKSFTGASYLKIHNRIHTGEKNYACDACSYRCISLAALKAHRMIHTGEKPYACDLCTYRSSTSKHLRNHKLTHNKTPYF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-