Oalb031167.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Odontocerum albicorne
Gene Symbol
-
Assembly
GCA_949825065.1
Location
OX463863.1:16689771-16707040[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.8e-06 0.00014 23.1 2.7 3 23 113 133 112 133 0.99
2 18 4.2e-06 0.00033 21.9 1.3 1 23 139 161 139 161 0.98
3 18 8.9e-06 0.00069 20.9 0.5 1 23 167 189 167 189 0.96
4 18 1.2e-06 9.4e-05 23.6 0.8 1 23 195 217 195 217 0.98
5 18 1.1e-06 8.6e-05 23.8 1.1 3 23 226 246 224 246 0.97
6 18 0.01 0.8 11.3 3.4 1 23 252 274 252 274 0.97
7 18 3.3e-08 2.6e-06 28.6 1.1 1 23 280 302 280 302 0.98
8 18 2e-06 0.00016 22.9 3.3 1 23 308 330 308 330 0.97
9 18 1.6 1.2e+02 4.4 0.7 1 13 336 348 336 350 0.89
10 18 0.00025 0.019 16.4 3.0 3 23 437 457 436 457 0.97
11 18 0.0017 0.13 13.7 4.6 1 23 463 485 463 485 0.95
12 18 0.00059 0.046 15.2 0.5 1 23 491 513 491 513 0.98
13 18 0.00067 0.052 15.0 0.2 1 23 519 541 519 541 0.92
14 18 0.0029 0.22 13.0 8.5 1 23 547 570 547 570 0.97
15 18 7.5e-06 0.00058 21.2 3.4 1 23 730 752 730 752 0.99
16 18 0.0008 0.063 14.8 6.2 1 23 758 780 758 780 0.98
17 18 7.8e-05 0.0061 17.9 0.2 1 23 786 808 786 808 0.97
18 18 9.7e-07 7.5e-05 23.9 2.3 1 23 813 835 813 835 0.98

Sequence Information

Coding Sequence
atgaatatcGACGTGTCGCACGGAACATTCCAAGAAATGGAACCTACTTCAAATATAAAAGAAGAACAAATAGATAAAGAAGATCTTAATGAGACGTTTCCGGATTACAGTATTGAAACACTGGAAGGGAGTATTAAAAAGGAACCAGAGGACGTTGAATACAGTAATGATAAGGGTGTTTGTCAAACTGTGACACAGGAAAGTGTTATGGTTTCATCATCCATTGTGAAGATTGAAAATATCGATAACAACAAAGTTTCAATTGAAGTGCACGAGAAACGTTCTCAGAAAATTGAGAAAGTACAAAATAAGGTTCAAGCCGATAAGTCCCACGGTTGTCCAGAGTGTGGGAAATGTTTCAGAAAGAAATCCTATTTAATAAGACACAAGAAGATTCACAGCGAACGGAAAACTTTCAGTTGCGACATATGCTCGAAAAAATTTAACGATCCGAGCAATTTATATAACCACAAGAAGATTCACAATAAAGACACGTCGTTCCCTTGCCAGGATTGCggaaaagttttcaaaatgaaGACCTACTTGAAACAACACGAAATCATACATCGAGACATTAAACCATTCTCTTGCGGAGAATGCGGTCGAGGTTTCAATAACAATAGTAATTTATTGAATCACAAGAAAACACATTCGAGAACCGAgaacactttattttgtaatacttgtGGAAAATCGTTTGCTAGTAAGAAGAGTTTGAATATACACCAACGGATACATAATGAAGAGAAACCGTATTGCTGCGGAATATGCGGGGACTTATTCACTCAAAGTTGTTCTTTAAAACAACATCAGATGGTCCACAAAGCTGAGAAACCGTTTGTTTGCGCGGATTGTGGGAAGGCATTCACCCACAAAAGTAATTTGACTGTTCATCAAAAGATACACACCGGATTAGAATTGTTTCATTGTAACGAATGCGAAAAGGTATTCACTTATAAAAGTAACTTGAAAGTGCACTTGAAACTTCATAGTGGGAGGAAAGATTATTGCTGCGATCTTTGTGGGGAAGAATTTGCGCAAAGggTCAAACGATGGGGAACGAACAGTAAAGTGGGGCGTGTTGGAGATGAAACGTTGGAATGGGACGCTATCGAAATAAAAGAAGATGATATTAAGAAGGAGATTGAAGAAATGAGTGACTCAAATGATGACGGGTTTTCTACAAGTGGAAgtTCATCATATTCATATCCTGCAAGTGATTATAAAAACCCTCGTGACAAGGTACTCTCACCtctaaaatcaaataatgaaacAGGCAACAAGAAAATTGGGAAGAAATCTGCTTGTTGTAAAGTCTGCGGCAAAGTGTTCAAGTCTGGAAGAAACTTAACACTTCACAAGAAAGTTCACAGTGGCGAGAAACCACATTGTTGTTTAGAGTGTGGGAAGAAATTCTTAAGGAAGTCTTCGTTGCGCGTAcacgaaaggattcatagtggagaaagaCCCTTCAGTTGTGCACAGTGTGGGCAACTCTTCACTCTGAAAAGTAACATGAAAGTCCACGAAAGGGTACACAATAGAGGGATCACCTTCCCTTGTGGAGAGTGTGGCAAGGAATTTGTCCGCCAGAGTGATTTAGATTTCCATGCTAAGAGTCACACAGCTGAAGGAGCCCACAAATGTGATAAGTGCGGAAAAGCTTACACTAGTCAGCGTTGTTTTAAACAACATTATAAAAGATACCATTCAGAAGTTAATTCAAATGGTGACCTACACAAATCAACGTCTCATACAAAAGTTAATTCAAACGGTGACCTACACAAATCAATGTCTCATACAGAAGATAATTCAAATGGTGACCTACACAAATCAATGTCTCATTCAGAAGTCAAGTCAAATGGTGACCTACACAAATCAACGTCTCATACAGAAGTGAATTCAAATAGTGACCTACATAAATCAATGTCTCATTCAGAAGTTAATTCAAATGGTGATCTACACAAATCAATGTCTTATTCAAAATATCCTGTCAAAGAGCATAGTAAAGAGAAAGTTTCAGATATTAAAGAGGGTGAAATAAACGCTTGTCTGGATAATTCAACAATCATTGAAGAGAAACAACTTAAAGAAATGTCCGGAATTTATGAAAATCAAGATAATATTCACAAACTTCTTAAAAAAGGTTACGATATTCATGAAAATGTTCAAAGCGATGGGGGATTGTATAAATGTGAATATTGTGGACTGGTTTTTATTCACGAACACAATTTGAATTCTCATAAACGAATACACAGCATGAAACAGACGTTTGAATGCAAGCACTGTGGTAAAATCTTCGAAAGGAAAAGATGTTTTAGAGAACATGAAATGTCTCACGAAAACGTTAAACCTTTTGCTTGTGCCGAATGTGGCAAATCATTTGTTGCCGAAAGATATTTGAAGCAGCAtttgaaaatacacaaagggTTTCAATATCCCTGCGaagaatgtcaaaaaacattttcgacttataaatatttgacacAGCATATGAAGTCCCACGGTAAAAAGTTGCCCCGCTCCTTTGTGGGATTGGGAAATGTTATACAAATGAACAATTCCTTGAAAAAGTAA
Protein Sequence
MNIDVSHGTFQEMEPTSNIKEEQIDKEDLNETFPDYSIETLEGSIKKEPEDVEYSNDKGVCQTVTQESVMVSSSIVKIENIDNNKVSIEVHEKRSQKIEKVQNKVQADKSHGCPECGKCFRKKSYLIRHKKIHSERKTFSCDICSKKFNDPSNLYNHKKIHNKDTSFPCQDCGKVFKMKTYLKQHEIIHRDIKPFSCGECGRGFNNNSNLLNHKKTHSRTENTLFCNTCGKSFASKKSLNIHQRIHNEEKPYCCGICGDLFTQSCSLKQHQMVHKAEKPFVCADCGKAFTHKSNLTVHQKIHTGLELFHCNECEKVFTYKSNLKVHLKLHSGRKDYCCDLCGEEFAQRVKRWGTNSKVGRVGDETLEWDAIEIKEDDIKKEIEEMSDSNDDGFSTSGSSSYSYPASDYKNPRDKVLSPLKSNNETGNKKIGKKSACCKVCGKVFKSGRNLTLHKKVHSGEKPHCCLECGKKFLRKSSLRVHERIHSGERPFSCAQCGQLFTLKSNMKVHERVHNRGITFPCGECGKEFVRQSDLDFHAKSHTAEGAHKCDKCGKAYTSQRCFKQHYKRYHSEVNSNGDLHKSTSHTKVNSNGDLHKSMSHTEDNSNGDLHKSMSHSEVKSNGDLHKSTSHTEVNSNSDLHKSMSHSEVNSNGDLHKSMSYSKYPVKEHSKEKVSDIKEGEINACLDNSTIIEEKQLKEMSGIYENQDNIHKLLKKGYDIHENVQSDGGLYKCEYCGLVFIHEHNLNSHKRIHSMKQTFECKHCGKIFERKRCFREHEMSHENVKPFACAECGKSFVAERYLKQHLKIHKGFQYPCEECQKTFSTYKYLTQHMKSHGKKLPRSFVGLGNVIQMNNSLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-