Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.99 9.9e+02 0.6 0.0 8 22 63 77 61 77 0.85

2 14 0.99 9.9e+02 0.6 0.0 8 22 80 94 78 94 0.85

3 14 0.99 9.9e+02 0.6 0.0 8 22 97 111 95 111 0.85

4 14 0.99 9.9e+02 0.6 0.0 8 22 114 128 112 128 0.85

5 14 0.99 9.9e+02 0.6 0.0 8 22 131 145 129 145 0.85

6 14 0.99 9.9e+02 0.6 0.0 8 22 148 162 146 162 0.85

7 14 0.99 9.9e+02 0.6 0.0 8 22 165 179 163 179 0.85

8 14 0.99 9.9e+02 0.6 0.0 8 22 182 196 180 196 0.85

9 14 0.99 9.9e+02 0.6 0.0 8 22 199 213 197 213 0.85

10 14 0.99 9.9e+02 0.6 0.0 8 22 216 230 214 230 0.85

11 14 0.99 9.9e+02 0.6 0.0 8 22 233 247 231 247 0.85

12 14 0.99 9.9e+02 0.6 0.0 8 22 250 264 248 264 0.85

13 14 0.83 8.2e+02 0.8 0.0 8 22 267 281 265 286 0.88

14 14 1.8 1.8e+03 -0.3 0.0 8 20 284 296 282 298 0.84

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.99	9.9e+02	0.6	8	22	63	77	61	77	0.85
2	14	0.99	9.9e+02	0.6	8	22	80	94	78	94	0.85
3	14	0.99	9.9e+02	0.6	8	22	97	111	95	111	0.85
4	14	0.99	9.9e+02	0.6	8	22	114	128	112	128	0.85
5	14	0.99	9.9e+02	0.6	8	22	131	145	129	145	0.85
6	14	0.99	9.9e+02	0.6	8	22	148	162	146	162	0.85
7	14	0.99	9.9e+02	0.6	8	22	165	179	163	179	0.85
8	14	0.99	9.9e+02	0.6	8	22	182	196	180	196	0.85
9	14	0.99	9.9e+02	0.6	8	22	199	213	197	213	0.85
10	14	0.99	9.9e+02	0.6	8	22	216	230	214	230	0.85
11	14	0.99	9.9e+02	0.6	8	22	233	247	231	247	0.85
12	14	0.99	9.9e+02	0.6	8	22	250	264	248	264	0.85
13	14	0.83	8.2e+02	0.8	8	22	267	281	265	286	0.88
14	14	1.8	1.8e+03	-0.3	8	20	284	296	282	298	0.84

Coding Sequence: ATGGACAAAGGTGAGCTCCTGCACGTCTTGCTCATCGTGGGAATGCTTGTCTGGCGGCCGAACCCGGAGGAAAAGATTGGGTTCTTTATAATCGCTGCTATTTGGGGATTAGCTGACTCCATCTGGTTGATTCAAGTCAATTTAAAAGTGATGTgcttaacatacatacaaagaTCTGCTATCTCTGCCCTATTCTACAAGAGACACGGCAAGTTATCTCAAAGATCTGCTATCTCTGCCCTATTCTACAAGAGGCACGGCAAGTTATCTCAAAGATCTGCTATCTCTGCCCTATTCTACAAGAGGCACGGCAAGTTATCTCAAAGATCTGCTATCTCTGCCCTATTCTACAAGAGGCACGGCAAGTTATCTCAAAGATCTGCTATCTCTGCCCTATTCTACAAGAGGCACGGCAAGTTATCTCAAAGATCTGCTATCTCTGCCCTATTCTACAAGAGGCACGGCAAGTTATCTCAAAGATCTGCTATCTCTGCCCTATTCTACAAGAGGCACGGCAAGTTATCTCAAAGATCTGCTATCTCTGCCCTATTCTACAAGAGGCACGGCAAGTTATCTCAAAGATCTGCTATCTCTGCCCTATTCTACAAGAGGCACGGCAAGTTATCTCAAAGATCTGCTATCTCTGCCCTATTCTACAAGAGGCACGGCAAGTTATCTCAAAGATCTGCTATCTCTGCCCTATTCTACAAGAGGCACGGCAAGTTATCTCAAAGATCTGCTATCTCTGCCCTATTCTACAAGAGGCACGGCAAGTTATCTCAAAGATCTGCTATCTCTGCCCTATTCTACAAGAGGCACGGCAAGTTATCTCAAAGATCTGCTATCTCTGCCCTATTCTACAAGAGGCACGGCAAGTTATCTCAAAACGTAGCTTGA
Protein Sequence: MDKGELLHVLLIVGMLVWRPNPEEKIGFFIIAAIWGLADSIWLIQVNLKVMCLTYIQRSAISALFYKRHGKLSQRSAISALFYKRHGKLSQRSAISALFYKRHGKLSQRSAISALFYKRHGKLSQRSAISALFYKRHGKLSQRSAISALFYKRHGKLSQRSAISALFYKRHGKLSQRSAISALFYKRHGKLSQRSAISALFYKRHGKLSQRSAISALFYKRHGKLSQRSAISALFYKRHGKLSQRSAISALFYKRHGKLSQRSAISALFYKRHGKLSQRSAISALFYKRHGKLSQNVA

Sequence clustering based on sequence similarity using MMseqs2