Basic Information

Gene Symbol
ARID5B_1
Assembly
GCA_949825065.1
Location
OX463863.1:7914322-7928420[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.2e-17 1.9e-13 51.6 0.0 2 89 252 335 251 335 0.86

Sequence Information

Coding Sequence
ATGACACATCTGATTATGCAAATGTATCGAGAGATATTAGCATTTGAGCGTGTACCCGCGTTGACATCTAGCGGCGCGCGGGATAAACTGGACGAAGTAGTGGGCATCTCAGAGCGTGTGGTGGTGAGGGCCGAGGAGCTGCTATCTTGGGTGTGCGGGGGTGAGGGCTGGCGCTGGGGCTTGCGTGCCGCCTGGGCTCCCTCACTCGCACTGCCCTCCCCCGCCGCGGATGAGCCCTCGGGGCCCGTGTCCACGCTGGAGCGCCGTCTCGACTTCAGCGACATCAACAAAGAGAAGGTCGCCATAGCCAATACAGATGCGGCGTGCGTGGTGGTGTTCTCGTACCCTCGCTACTGCCGATATCGCGCCATGCTGCGCCGTCTGGAAGGGCTGGCCGCGCAGTGGCTGCGGGACCCGTTGGTCGTGGCCCTTGGTGGGTACGCTCCGCCCTCCAACAACACCAGGATACTCTACTGTCGGGAGACGTTCGAATACCCCGAACTGGAAGGGCACGAATTTGTGTGCAACCACATGGCCCCGCGACTGAAAGGACGTGGGCGTGGCCGCAGGAGGAGGGCCCGCTCGGCCTCCAGGTCTTCTGCCAGCGACAGCGAGACCAGCACTCCCAGACCCGTCACCCCACAAGCGACGAGATCGTCTCTCCGCTCGTCGGCTCTGTCGCCTCCATCCCCCGCGGGGTCTGGGGACGAGGAGTCCCCGAGCAAGGACAAGGAGGTGAAGGAGACTCTGGCGGAGAAGGCCTTCATGCGGCGCCTGCGTCTCTTCCACCAGCGGAGGGAGGGCGGTGCGCAGGCTAGGGTACTCGGCCAGAGGGGGAAGGAACTGAGCCTGCACATGGTGTACGAGACAGTGAAGCGGGCCGGGGGTTACGAACAGGTGACCAAGACCAGGGGCTGGCGTAGGCTGCTGGGCTCCTTGGGCGCTGTGGGCCATCAGGCTACCATGACCAGGCGGAACTACGAGAGATTATTGCTGCCTTTTGAACATTCGGAACGGCGGACCACTCAAGCGCAGACGCCCAGCACGCCTAGTTCTAATGGCACTTCAAGCAGCTCCAACACTCCCAACAGCAAGCCGGACAGGAAGAAGCATCTGGCCAGCATCGTCAACAATTCCGTGCCTATAGCCACCATCGACATATCAGATTCCCCAGTACGGGAAATCCTCAGTTCTTCAGCGGAGAAAACGCCCGTTCCCAGGCTCAGGACTCCTCCACCGGGCAAGAGAAAATCACATGAACCGAAGAAGATGGAACATAACCCGGCTCAGTTGCAAAACGGCGATAAAAAAGGCGCTGACACAGTTAAACGGAAGATATTGGAGGACAAGAACGATATCAAAGGAGACGTCATTAATTTGGACGATGAGAAAACGGATCAGAAAGAAGAGGCGCCGCCGGTGAACGCTTTCGATCCTTCGAACATCCTCAATCTAAACAAAGCTGAAGAAGACAAAGATGAAGAGGATTACGAGAAAGTGTCTAAGCCAGCTGCGGATTTGAACCAAGAGTTCTTGGATTCATTGCCAGGGATCCCCGTTGAAGATGTGAAAGACAGCATGCCGGAGACTGCACCATTGAAGAAGACCATCATCAGCGTTGTCCCACCGGAGAAACTGATGGCCAAAGACCTAGCACCAGGAGTGGTGGGGCTCGTCAATGGAGGTGGAGTGCTCGGTGCTATGCCCGATAAGGTAACACCAACTAGATCCAGACCTTCAAGTCTCCGTAGTGTGCGAGTCAAACCAGACCGGAGGCAGGGAGCCACTTCTGGGTCTCCTCCAGCGTCCATTCATCTCTCATCTTCAAACACTCCAGTTGTCACTCCGAACCCCACCCCGACACCTGTTGCCGGACCTCCTAGTGACGATGATCTCATCGAAGTCCCATACAAACCAAAGAGTCCAGAAATAATAGACTTAGACCTGTACGAGTCACCGGAGAGTCCGCAATCAGAGTCCAAACGGAAGAAACTGGATATACTGAAGAGAGGAGGTCTGGAAGTGACAGCAGTACGAGGATGGCCCGGACTGGACCCAGCGTTCCAGCAACAGATATTGAATCAAGCGCATTTCCTTCAAGTCTACGGCGCCTTCGCTCCGGGAATAACAGAGCGATACACGTTGCCTAAGGTGACTCAAGGGAAATCAATATACGGTTCGTCGAGCCCGGAGAAAACAGTTTACGGTAATCCGAAAGATCCGTTTATGCCTCCTCCGCATGTTTTACAGGGTGTCGCTCCAAGAAAAGTACCGTGTGTTCAAAAAACACCCGCTGCAGATATTCTCGATCTTACGATAAAACCGGCTGTAGAAATTATGCGCGTACCCGGCAATCCTGATCAGCCTCAGAACTTATCGGCAAAGAAGAATTGCGCAACGAACTCTGCTGTGGCATCGACCGCCAGCAATGATGAGCCGAGACAGATTAACTCGGCTTTGGAAATAACACTAGTCAACAAGAACCACCGTTCGAATAGAACTCCGCAGAAGCGATCGTCAACTGGTAAATTTGTGTCTAACAAATCTTCAGGTTATAATCCGTCGCAGCAAGCAACACCCCCTGTCCCACCGTTAATGCCGAGGAATCACGGAAAGAATTTACCGTCCAATTCGGCTTCAAATAGTGGCATCGTGATACCAAATTATTCACTTTCGTCATCTACCTCGAATATGGGCAGCATTTCTCCGACCACTCTAAACTCTTCGAATTCTTTAGGAAGCAGCGTCACATCCAATTTGTTACAAGGCGCCGGCGGTACGCTTCTACAAAACATAACCAATGCGACAAAAGTGAACAATCTAGCGGGCGCTCTGCCGTTTGCGCCACTTTTGGACACTTCCCTTTATATGAGTGCGCTCTATAGCAATCTAGTCGGGCAGATGGCCCCGAGTTTGACGGACCAGCAACTCGCCATATGCAAAGAATTAATGTCGGGAAGGCTGAGATATCCTGGTGTTGCGGCGACGCCGACTTCAAATAGTTAA
Protein Sequence
MTHLIMQMYREILAFERVPALTSSGARDKLDEVVGISERVVVRAEELLSWVCGGEGWRWGLRAAWAPSLALPSPAADEPSGPVSTLERRLDFSDINKEKVAIANTDAACVVVFSYPRYCRYRAMLRRLEGLAAQWLRDPLVVALGGYAPPSNNTRILYCRETFEYPELEGHEFVCNHMAPRLKGRGRGRRRRARSASRSSASDSETSTPRPVTPQATRSSLRSSALSPPSPAGSGDEESPSKDKEVKETLAEKAFMRRLRLFHQRREGGAQARVLGQRGKELSLHMVYETVKRAGGYEQVTKTRGWRRLLGSLGAVGHQATMTRRNYERLLLPFEHSERRTTQAQTPSTPSSNGTSSSSNTPNSKPDRKKHLASIVNNSVPIATIDISDSPVREILSSSAEKTPVPRLRTPPPGKRKSHEPKKMEHNPAQLQNGDKKGADTVKRKILEDKNDIKGDVINLDDEKTDQKEEAPPVNAFDPSNILNLNKAEEDKDEEDYEKVSKPAADLNQEFLDSLPGIPVEDVKDSMPETAPLKKTIISVVPPEKLMAKDLAPGVVGLVNGGGVLGAMPDKVTPTRSRPSSLRSVRVKPDRRQGATSGSPPASIHLSSSNTPVVTPNPTPTPVAGPPSDDDLIEVPYKPKSPEIIDLDLYESPESPQSESKRKKLDILKRGGLEVTAVRGWPGLDPAFQQQILNQAHFLQVYGAFAPGITERYTLPKVTQGKSIYGSSSPEKTVYGNPKDPFMPPPHVLQGVAPRKVPCVQKTPAADILDLTIKPAVEIMRVPGNPDQPQNLSAKKNCATNSAVASTASNDEPRQINSALEITLVNKNHRSNRTPQKRSSTGKFVSNKSSGYNPSQQATPPVPPLMPRNHGKNLPSNSASNSGIVIPNYSLSSSTSNMGSISPTTLNSSNSLGSSVTSNLLQGAGGTLLQNITNATKVNNLAGALPFAPLLDTSLYMSALYSNLVGQMAPSLTDQQLAICKELMSGRLRYPGVAATPTSNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-