Basic Information

Insect: Ochropleura plecta
Gene Symbol: ush
Assembly: GCA_905475445.1
Location: FR997727.1:19513145-19516850[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.008 0.96 11.3 0.2 1 20 123 142 123 144 0.94

2 9 9.9e-05 0.012 17.3 0.9 1 23 181 203 181 203 0.98

3 9 0.061 7.4 8.5 0.6 3 21 234 252 233 253 0.92

4 9 0.022 2.7 9.9 3.9 2 21 495 514 494 515 0.95

5 9 0.017 2.1 10.2 0.2 3 20 544 561 542 563 0.91

6 9 1.9 2.3e+02 3.8 0.0 2 23 591 612 590 612 0.93

7 9 0.0097 1.2 11.0 1.3 1 23 618 640 618 640 0.99

8 9 0.5 60 5.6 0.7 1 23 679 702 679 702 0.95

9 9 0.21 25 6.8 0.7 2 20 738 756 738 758 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.008	0.96	11.3	0.2	1	20	123	142	123	144	0.94
2	9	9.9e-05	0.012	17.3	0.9	1	23	181	203	181	203	0.98
3	9	0.061	7.4	8.5	0.6	3	21	234	252	233	253	0.92
4	9	0.022	2.7	9.9	3.9	2	21	495	514	494	515	0.95
5	9	0.017	2.1	10.2	0.2	3	20	544	561	542	563	0.91
6	9	1.9	2.3e+02	3.8	0.0	2	23	591	612	590	612	0.93
7	9	0.0097	1.2	11.0	1.3	1	23	618	640	618	640	0.99
8	9	0.5	60	5.6	0.7	1	23	679	702	679	702	0.95
9	9	0.21	25	6.8	0.7	2	20	738	756	738	758	0.92

Sequence Information

Coding Sequence: ATGCATTGTTCTCCTGCATTCGTGAGGCAACTTCGCTGTCAAAGGGTAGgtGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGCACACCGAGCTCAGAGGGCGAACGGGCTGCCTCCAGCGGAGGCGTTTCGCCTGCATCGGGGGGATCGCCTGCCGCCTCGCCTCCTCGCTTGCGCCTCAACACCAGTCTTGCCACAGACCCCGCGCTAGCCCCGCAGGCGACTGCGCTCAAGCATGAGCCACCTTCGCCATCTCCGCCGCCAGCACCTGCACCGCAAGCAAGAGACTTTCTTGCCATAACCGCGGCGGCCTTCCCAGGGCTGTTTCCTGCGACTGGCCCACCCGGCTACATATGCAAGCCATGCGGCATTCGGTATTCGTCTCTAAGTACATTGCAAGCTCATCAAGAACATTATTGTTCAAATAGACTGCCGAAGCCAGTTGAACCGAATGCTACAACCGATCCAGCCGTAGATGAGTCCAGCAGTGAAGCAAAGACTCCCCGCCCTGCAGGCAAACAATATGCTTGCACTTACTGCTCATATAGTGCCGATAAGAAAGTTAGCTTGAACCGCCACATGAGGATGCACTCCTCATCTCCGGTGAGCAGTGGAACTCCAGCGCCGACGCCGACTTCTAACGGAGAAGTGACGGAAGGGCCTCTGGTACAGGATCGTTACTGTGCCGACTGCGATATTCGCTTTAGCTCTATCAAAACTTACCGAGCTCATAAACAACACTATTGCAGCACACGACAAGTTGTGAAACAAGCCTTAGCTGCGGCCCGGGGTGGCTCTGCCACGTCAGGGTCCGCACCGCCCTCACCAGGAGCCACACCTCCAGCACAAAATCAGAACCAGTACGCACTGGCGTTACCCACAAATCCCATTCTCATAGTGCCCTACTCATTATTACGGGGCGCTAGTACTCTCCCAGGTACGACACTGCCTGACCCAGATACGCCATGTTTTCTGTTACCAAATGGAACATTCCAACCCATCAGTCGGGCACTGTCAAATATGAATGCGGAAGGAAAAGAAAATGAGGTTTTAAAATCAGCAAATCGGCCACGAGAGCCATCAAGAGATGGTGCGACCCCTTTGGATCTCAGTGTACGACGATCACCGGAATCTGTGGTGACTGATGAGCATGAGAAAGAAAACAGACTTCGGTCTACGACCCCCGAGCAGATCGTATGCGCGCCTTCACTTCCAGGATCTCCAGGAACACCATCTCCGTCTCGAAGGTCTTCTTCCCcaagcgcagaaagttcaccaAAGCGAAAGAGATTAAACTCTAGAGGGCCAACTCCCAAACTTCCGAGTGTGCCGTCGCCTCCTGAAGATAAATACACTCCAATAGTTCCTCCTGCAATTCTGCCTCCTGCTCTGGCATTGCGACTTGCGTCGGAACTACCAGTTACCGCGGCATCGCCCCAAGTGCTTGTGAAGCAAGGAGTATCAAAGTGCAAAGAGTGCAACATTGTTTTCTGTAAATACGAGAACTACAGGATCCATAAGCGGCACTACTGCTCGGCGGGTGGAGGCGAGGAGCGCGCGAGCCCCGCGCCCCCAGAGCCCGGTCCACCACCACAGTATCGTCAGCTGATCTGTCTGGCGTGTGGCATCCACTTCAATTCGCTGGACAATCTGACGACTCATCAATCCTTCTACTGCACAAAGCGGGAGACACGGTCTCCTCGAAGCCTTCCTGAGGCTCCTCGACCTACATCGGGATCTGAAGGTGGGTGGAAATGCCCGTGCTGCGACGTGGTGTCACCGACGGCAGCGGCGGCGCAGCGTCACATGGACGCGCACGCCGGAGTCAAGGCGTTCCGCTGCACCATCTGCCGGTACCGGGGCAACACACTCAGAGGCATGCGCACTCATATACGCATGCATTTCAACAACAAGAAACCGGCTGATTTACAGGAAGAAAGCTACATCGCATGCGTTCTAGAAGAGGACAGCCGAGAGGCGACATCCCCAAGCCCAGCAGTTGGCGGAGAACGCGTCCACCGCTGCGGTAGCTGCGCGTACACCTCCACATACCGAGGCAATGTGGTCAGACACGCCCGCCTGGTCCACGCAACTGATGAACCAGAAGAGGAGCAAACCTCCCCTGTTCCTCCCCCAACAACAACAGTTGACATCAAGAAGGAGCCAGACACGGAACTAGAAGAGACCCCGAACTATTGCAAGTCTTGTGATATTTCCTTCAAGTATGTCAACACTTATAAGGCACACAAGCAGTTTTATTGTACTGCTAACAATCAGGATGCGACGGCAAATAACAACGTGCCCACACCTGCGAGGGTCAGTGACACGCCTGTACTATGA
Protein Sequence: MHCSPAFVRQLRCQRVGEDEEWGNESEAMPGEPRTPSSEGERAASSGGVSPASGGSPAASPPRLRLNTSLATDPALAPQATALKHEPPSPSPPPAPAPQARDFLAITAAAFPGLFPATGPPGYICKPCGIRYSSLSTLQAHQEHYCSNRLPKPVEPNATTDPAVDESSSEAKTPRPAGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTPTSNGEVTEGPLVQDRYCADCDIRFSSIKTYRAHKQHYCSTRQVVKQALAAARGGSATSGSAPPSPGATPPAQNQNQYALALPTNPILIVPYSLLRGASTLPGTTLPDPDTPCFLLPNGTFQPISRALSNMNAEGKENEVLKSANRPREPSRDGATPLDLSVRRSPESVVTDEHEKENRLRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPSAESSPKRKRLNSRGPTPKLPSVPSPPEDKYTPIVPPAILPPALALRLASELPVTAASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGGGEERASPAPPEPGPPPQYRQLICLACGIHFNSLDNLTTHQSFYCTKRETRSPRSLPEAPRPTSGSEGGWKCPCCDVVSPTAAAAQRHMDAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEEDSREATSPSPAVGGERVHRCGSCAYTSTYRGNVVRHARLVHATDEPEEEQTSPVPPPTTTVDIKKEPDTELEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDATANNNVPTPARVSDTPVL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00148050;
80% Identity: -