Ople038972.1
Basic Information
- Insect
- Ochropleura plecta
- Gene Symbol
- Znf711
- Assembly
- GCA_905475445.1
- Location
- FR997751.1:5840255-5854276[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9 2.2e+02 3.8 0.2 1 12 25 36 25 47 0.82 2 13 5.4 6.5e+02 2.4 0.2 1 11 79 89 79 92 0.88 3 13 0.012 1.4 10.7 1.7 1 23 281 304 281 304 0.97 4 13 9.5e-06 0.0011 20.5 0.5 1 23 311 333 311 333 0.97 5 13 0.49 59 5.7 1.2 2 23 338 359 337 359 0.96 6 13 0.005 0.6 11.9 0.6 2 23 363 385 362 385 0.96 7 13 4.2e-05 0.005 18.5 6.7 1 23 388 410 388 410 0.95 8 13 0.87 1e+02 4.9 4.1 1 19 414 432 414 437 0.93 9 13 0.22 27 6.7 1.4 3 22 447 466 446 470 0.90 10 13 0.0017 0.2 13.4 1.8 1 23 482 505 482 505 0.96 11 13 0.19 23 6.9 4.6 1 23 511 534 511 534 0.97 12 13 2.3e-05 0.0027 19.3 0.3 3 23 545 565 544 565 0.99 13 13 0.0004 0.048 15.4 1.0 1 23 571 594 571 594 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGAATCATGTCGGCAACATGCGCCCGCGCGCACGCCGACATGTTGGCGGCTTGGgCACGGGGCAATTACATTTGTGAAATCTGCAAAGTAAGATTTGCCGACGAGATTCCACGAGATGAGCATTTTAAGCAGCATTTTATAATATATGAATGCCTTCAGTGTCCACTTAGACATACTGAAAGACTCAAAATATCTGAACATGTTCGCAAGATTCACGAGGAATCCTCGTTCCCCTGCAGCAAATGTGACGCAGAATTCAACGTTGGTTCTTTTTGCCAAGCCTGTTTAAGCTCTGACCGAAACCTATCTTCGATCGGCGAATATGTTGATGTCTTTAGAATTATTTCAAATAATACATTGCCGGAACCTTTATTTCTATGTTGGGAATGTTTGGCCATActtaaaaagacaaaacaatttaaaaatagaatagatgaAGCTCAGAGGATCTTGACCTACCACCATGTCAATAAAAAGaagTTATTTCTACAGTCCTTGTCGAAATTAACTAAAACACACACAGATCATACAATAGTCATCGCTTATGATGAAGAAGATGATTGCAAACaaaaattagaaataaaacaagaaaatgaACATTCCAATGATTCCTATATTAACCATGAAGAAAACAATGACATTTCCctccaaaaaattaaaaacgaaaattTAGAACAcacaaaactaacaaaaaagaataaatcaTTGCATTATAAAATTGTCTATGAAAAGAATGACAAAAAGGTTCTGAGGAAAAAGTTTGAAATACAAATAGAGGatacaaaaaattgtttggACAGAGAGAGAAATAGTGATTTCTATAAGAAGTTTAAATACAAATGCAAGCTGTGTGTCAATGGATTTAATTTAAAGGAGAAATTAAAAAGAcatgttttaaaatatcatgATGAATCTGTTGGCTCTCACATATGTCCTATATGCAACGTACGCTTTACCAGTGAGTCTCTACTAAACGCGCATACACTAACTCACGGGCACGCCTGGGAATGTGCGCGCTGTGGCTTACAATGTTATACGACAAAGAGAATTAATGCGCATATTAAAACGCATCGAGCTATCCAGTGCGTTTACTGTGAGACGGTGTTCCAgGACTTGTCGACATTCTACACACACTACAAATCGTTGCACAGTATATTTCTGTGCGATCACTGCGGCAAACGGTGCAAGACTAAATATATGCTTGAAAAACACATGAGTCGCCACGTGGACACGCACACGTGTCGCACGTGCCTGCGCGGCTACAAGTCCCGCGCCGCGCTGCGCAAGCACTGCTCGCTGCAGCACAGCGCGTGCGCGGCCGAGCAGGCGTACTGCGTGTTGTGCGACAAGCAGTACCGCAGCGAGCACGTGTACAGGCGACATGTGCACACTAGCGCCGCGCATCGGAGGGAGCGGGACACACAAGTCAAAAAGAAGTTCCCATGTCCCGAATGCAACAACACATATTCTCGGAGAGCGTACATGATGAACCACTTCCGTCATGTGCATATGAACCAGTCCAAGTACTACTGCACTAATTGCGACAGACACTTCCTGAACAGGACGCGGTACGTAGACCACATGCGGTACAACCATGAAGGAGTTAAGAAACAGAAGgataaattatgtaatatttGTGGAAGAGGATTTGCTgcCAACCGTACTCTACTCAATCACATGCGAACGCACTCAGGCGAACGTCCTTACGAGTGCGAATACTGCTCTGCCAAGTTCACCCAGCGAACATCAATGTTGTCACATATCAAATATATTCACTTGAAGAGCAAGAGGCGACCGCACTGGCAGCAGTAA
- Protein Sequence
- MERIMSATCARAHADMLAAWARGNYICEICKVRFADEIPRDEHFKQHFIIYECLQCPLRHTERLKISEHVRKIHEESSFPCSKCDAEFNVGSFCQACLSSDRNLSSIGEYVDVFRIISNNTLPEPLFLCWECLAILKKTKQFKNRIDEAQRILTYHHVNKKKLFLQSLSKLTKTHTDHTIVIAYDEEDDCKQKLEIKQENEHSNDSYINHEENNDISLQKIKNENLEHTKLTKKNKSLHYKIVYEKNDKKVLRKKFEIQIEDTKNCLDRERNSDFYKKFKYKCKLCVNGFNLKEKLKRHVLKYHDESVGSHICPICNVRFTSESLLNAHTLTHGHAWECARCGLQCYTTKRINAHIKTHRAIQCVYCETVFQDLSTFYTHYKSLHSIFLCDHCGKRCKTKYMLEKHMSRHVDTHTCRTCLRGYKSRAALRKHCSLQHSACAAEQAYCVLCDKQYRSEHVYRRHVHTSAAHRRERDTQVKKKFPCPECNNTYSRRAYMMNHFRHVHMNQSKYYCTNCDRHFLNRTRYVDHMRYNHEGVKKQKDKLCNICGRGFAANRTLLNHMRTHSGERPYECEYCSAKFTQRTSMLSHIKYIHLKSKRRPHWQQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00302531;
- 90% Identity
- iTF_01084619;
- 80% Identity
- -