Ople011335.1
Basic Information
- Insect
- Ochropleura plecta
- Gene Symbol
- -
- Assembly
- GCA_905475445.1
- Location
- FR997726.1:4775400-4783226[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.013 1.6 10.6 2.5 1 23 310 332 310 332 0.98 2 11 1.1 1.3e+02 4.6 1.3 1 23 339 361 339 361 0.91 3 11 0.17 20 7.1 0.7 1 23 365 388 365 388 0.98 4 11 0.039 4.6 9.1 3.3 1 23 393 416 393 416 0.94 5 11 1.8e-07 2.2e-05 25.9 0.5 2 23 421 442 420 442 0.96 6 11 0.0028 0.34 12.7 1.3 2 23 448 468 447 468 0.97 7 11 0.00076 0.091 14.5 1.7 3 22 478 497 477 501 0.92 8 11 0.093 11 7.9 0.8 2 19 510 526 509 528 0.92 9 11 0.0043 0.51 12.1 0.6 1 23 535 558 535 558 0.96 10 11 3.2e-06 0.00038 22.0 0.5 3 23 570 590 569 590 0.97 11 11 0.00011 0.014 17.1 0.4 1 23 596 619 596 619 0.96
Sequence Information
- Coding Sequence
- ATGAGCGCTGTAGTAGCGAGTAATCTGAGCCCGCACCCGGGTCTTAATTTAAGATGTTACACCTGCTTCAGTCTAGACAGGAATTTAAAACCATTGTCACCTGAAGAAAGATTTCTTGTGGCTATGCTGTGTCCAGAAATGTTTTCTCATGCAACGGTGGCGGAAGGGTTATCAAGCTTAAAAATAACAGGAGTAGAAACAATAAACATAATACCACCTCTACCAGAAGTTATACCTACCAATCACAACCAACCAAGCTCACCTGCAATGTTAAAGATGGAACCAGTTACTATTAAGATAGAGATTGATGATAGAGAGAAATATTTTGGCGGTGACCGTGGTCAACTGACACAACCCACGAAAATTCAGCAAGAATCTAGCGATGAGGCTACCGATACAGCTAGTGAAATTGACATGAATGATGATCCACTGAAGAcacctaaacaaaaaaaagtaaaagttgtAATGAAATGTGAAAAAACAGAAATGCTGTCTCAAAATGTGGTAAAAGATGCAATTATTCCGCCTAATATTATATCCAGACCTCAAAATGTGATAATCAATGTGCCAAAAGAAAAAGTTACTCTCAGAGGGCATAAAGAAACAGTAAAAGTTACCCGTGGTGCTCCAAAAGCTGTAACACACAAAGATACCACCCCAGTTTTAGTAAAAAGAGAAGGAAAATGTGTTCCGACTGTAGTGAAACAGAAAGGAAGAAGCGTTCCCAATCCAGTAAAAGGTAAAGGAATTGTTTCATCTGCACCAAAACGTGAAGAAGTAGCTCTTAAACCACCAACTGAACCTTCAGATTTGGGCCTGTGCAGCTTTGAAGAATATGATGAAGTgcaatgtttaattttaaacaacgCTGAATTGGATAAATTTAGAGATGCACAAAGGTTAAAACAGGGGTACAAAGGATGCGCATTTAAATGTGACACATGTATTGAAAAATTTAATAGTCAAAAAAATTTGGATGAGCATAAAAAGAAACATGTATTGgCGCGAGGCAGTCATATTTGCGAGGTGTGTGAACAGAGATTTTACGAAAAAAGTGTTCGAGATGATCATTACAGGCTGCATTTTGTagtttACCAATGCATGAAGTGCCCGTATCAAAGCAATGATCGGATAAAAATATCTGAGCACATTCGCAGAAATCATGAGGTCTCTGTGTTCGAGTGCAAGAAATGTAATATATATTTCAAGACGTTTAAGGAGAAGCGTAGACACAGAGTTTCTGTCCATGCTAAGAGACAACCTTGTGAAGAATGTAACAAAACGTTTACTAATCGGAGTCAGTTGAATACACACATGGCTATACATCAAAGAGAAACAACAGAATGTCCTACATGCAAGAAAAAGGTCAGAAACAATTATTTAGAAACACACATGAAATCACACGAAGACACTACCGAGGAAGGCGCGTACTGTGTTGATTGTGAAAAAACGTTTAAGACTCTGAAAAGCTACCAATCACATCTCAAAACTAGTCTTAAACATAACACAGTTGAAAAAGTTCGCATTAAATGTGATCATTGCGAAAAATACTTCTCGGCAGCCGGTTTGAAGCATCATGAAGAAGAAATCAGAGGAATTAAATATACTTGTGATATTTGTAAAAAGgatagtaaaaacaaaataatcctgGAAAGACACATTCGCTTCgttcataaagggcaaaagccaCAGCCGAAACCCAGGATCTGTGAATATTGTGGAAAATCGTTCACTataaaaaaatCTCTACAGGAACATATAAACAGTCATTTAGGCAATCGACCCCATGTCTGCAAAGATTGTGGAGCAACATTCGTTTATTCTGCTGCTCTTTATATGCATCGAAGACTTGTACATAATGAGAAGAGGAGAAAAGATGTGCCAAGCTAG
- Protein Sequence
- MSAVVASNLSPHPGLNLRCYTCFSLDRNLKPLSPEERFLVAMLCPEMFSHATVAEGLSSLKITGVETINIIPPLPEVIPTNHNQPSSPAMLKMEPVTIKIEIDDREKYFGGDRGQLTQPTKIQQESSDEATDTASEIDMNDDPLKTPKQKKVKVVMKCEKTEMLSQNVVKDAIIPPNIISRPQNVIINVPKEKVTLRGHKETVKVTRGAPKAVTHKDTTPVLVKREGKCVPTVVKQKGRSVPNPVKGKGIVSSAPKREEVALKPPTEPSDLGLCSFEEYDEVQCLILNNAELDKFRDAQRLKQGYKGCAFKCDTCIEKFNSQKNLDEHKKKHVLARGSHICEVCEQRFYEKSVRDDHYRLHFVVYQCMKCPYQSNDRIKISEHIRRNHEVSVFECKKCNIYFKTFKEKRRHRVSVHAKRQPCEECNKTFTNRSQLNTHMAIHQRETTECPTCKKKVRNNYLETHMKSHEDTTEEGAYCVDCEKTFKTLKSYQSHLKTSLKHNTVEKVRIKCDHCEKYFSAAGLKHHEEEIRGIKYTCDICKKDSKNKIILERHIRFVHKGQKPQPKPRICEYCGKSFTIKKSLQEHINSHLGNRPHVCKDCGATFVYSAALYMHRRLVHNEKRRKDVPS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -