Ople035878.1
Basic Information
- Insect
- Ochropleura plecta
- Gene Symbol
- -
- Assembly
- GCA_905475445.1
- Location
- FR997748.1:2882443-2885770[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.015 1.8 10.4 5.9 1 23 149 172 149 172 0.97 2 17 0.00064 0.077 14.7 2.1 1 23 181 204 181 204 0.96 3 17 0.018 2.2 10.2 0.7 2 23 217 239 217 239 0.97 4 17 0.00065 0.078 14.7 1.3 1 23 248 271 248 271 0.96 5 17 0.00015 0.018 16.7 3.5 1 23 283 306 283 307 0.96 6 17 0.00015 0.017 16.8 0.7 2 23 334 356 333 356 0.97 7 17 0.0014 0.17 13.6 1.2 2 23 366 388 365 388 0.96 8 17 0.082 9.8 8.1 1.2 3 19 394 410 392 413 0.92 9 17 0.00061 0.073 14.8 0.5 2 21 418 437 417 440 0.94 10 17 0.39 46 6.0 2.2 3 23 450 471 449 471 0.93 11 17 0.00081 0.096 14.4 3.5 1 23 476 499 476 499 0.94 12 17 0.0007 0.084 14.6 1.8 2 23 511 533 510 533 0.95 13 17 0.008 0.96 11.3 1.2 1 23 560 583 560 584 0.93 14 17 0.14 17 7.4 1.6 2 23 617 638 616 638 0.97 15 17 4.6 5.5e+02 2.6 2.0 3 23 646 668 644 668 0.90 16 17 0.02 2.4 10.0 0.1 1 23 704 726 704 726 0.97 17 17 0.086 10 8.0 1.9 1 23 732 755 732 755 0.97
Sequence Information
- Coding Sequence
- ATGGATCCAGACGTTGTAGTAAAGACAGAAAAGGATGCAAGAAAAGATCCTACCTTTTTTCTGCCTGAAGAGGCAATGTcatatgaaataaagaaaaaaaagaaaaagaagaaaaagaaacaggAAGATCCGTTTAAAGATATTGATGATAAGATGAGTGTTAAGATTGAGCCCATAACTCTGTTGGATCCTGAAGTTAAAATAAAGGTTGAAGATATTGAGGTCGAATTGGATTTTAATGATTTCGGTGACAGCGGCCTGGTCCACGAAGGGCATTACAACGAAGACAGTCAGGAACCGGCCGTGAAAATAGAGCCACAGAGTCACGACGCCGTCCTTCTTACATTCGAGAGCGTCATCAGCGACAAGCCACTTCTCGTTGCCGACAGCAGCGAAATGTTCCAATTCTCAAAGAATGACTTACCCATCAAACATGCCCCTACACATGTCTGTAAGGTCTGTCATCTAGTATTTCAATCAACAAAAACTCTACGAATGCATCAGAAGAGAAAACATAAATCCTTCAGAAAATCTTTCAAACATATTTGTGATCACTGTGGCATGTCGTATGAAATGAAGAACAGTTTAGTCGCACATATTAAGAGGAAACACGGACCTGATGCTAGTCCAGACGATAGAGAAGAAAGAACTTGTGAAATATGTGCTTTGGTCTTCAAAGGAATGACCCGGCTACGAATGCATATGAGACGTAAGCATGGCTCGTTCCAAGAATCTTTTAAACATATTTGCAAAGATTGCGGCTTGACTTACGATAAATATAGAAGTTTGATAGTCCATATACAACGTAAACATTCTAATAATCAAAAACCTGAGATCAATCAATGGTACAACTGTCCGTTCTGtcctaaaatatttacaagaagGGAGACTTATTCAAGACATGTGCAAAGGAAGCATCATGTCTCGGAAGAAAGTATTAAACAAGAAGGAAAGGCGGATTATCTGGCTAATTGTAAGAACGAAGAAACTGGTGAGATCACTTGCAAAGAATGCCCTCTAGTCTTTTCTTCTATTAATTTCTTAAAACTTCACATGAGAAGAAAACATAATGCGTTAAGAGAAGATTTTAGATTGAAGTGCCGGATTTGTAACTTGTCTTACGATAAAATCGAGAGTTTGAAACGGCATGTGAGAAGAAAACACGATAAAGGATCCCACTGCGAAGTTTGTAATAAACAATTTGATACGCGAGAGATGTACCTCAACCATTCTCACGTAAAAGCGATAAAAGAGTGCAATATTTGCGGTTTGATCTTCGCATCACAAGGCGGTCTAGCAAAACATTTGCGGTGCACACACAAAATAGATTCACCGAAGACAGTCTTCTGCAATCTATGTAACGAAGGTTTCCACGACAAACGGCAGCTAAAACCGCATTTCATGAAAGTGCATTTAAAAGTCTCCTACACTTGTAGATATtgcaaaaagatttttaaagcgaaagagagttatAGACGACACATATTATTTAAGCATCCTACTTCAAATCATTTTACCTCTCAGATGCAGAAATGCGAACAATGCAGTGCGACTTTCAAGGACGAATTTGATCTTTGTCGTCATATAAATTTAGATCACGGTCTCCCTGAAGATATGACGAAAGAAGCCCgagaaatgtttaaaataaaacgagaAGATCAGGATATAAAGGACAGTTTCCAGTGCACCAAGTGTCCAGAAACATATTTAACATGGGAACAGTTAAAATTACACTATGAGGCAACTCATCACAATATAGAAGAAACGCAGTGTCAAGTATGTGGAGAACTATTGCCAGGAAACGAATTACAGAAGCATATAAAAAATGTTCACAAGGATACAGAAATGCAGTGCAAATACTGTGAATTTAAGACGAATATTAGAGTAAGCATGACACAACATATGCTTAGGCATAAAAATGCAGAAACTATCCACTGTGATTACACTGGCTGCAAGTACAAGACGTTTTACGAAGGTGCTATGGAAAAGCATAAGCGGAAACATGCTGATCAAGGAGTCAAACTCCAATGTACGCAATGCCCGTTCCAATCAATGAAcaaatacattttgaaatatcaTGAAGAAGCTCATGAAACTGGGAAAAAACGATATATGTGTGATCAATGTGATTATGCAACGATTTTACCAGCTAATCTTGTGCAGCATAAATATAAGCATTCTTCAGAGAAGAGATTCAAGTGTGAGGTATGTCCATTCGCAACGAAGTATAATACGTCACTGAGATTCCATGTTAGGAAAAAACACTGTGATCTACCCACATTCAGTTAA
- Protein Sequence
- MDPDVVVKTEKDARKDPTFFLPEEAMSYEIKKKKKKKKKKQEDPFKDIDDKMSVKIEPITLLDPEVKIKVEDIEVELDFNDFGDSGLVHEGHYNEDSQEPAVKIEPQSHDAVLLTFESVISDKPLLVADSSEMFQFSKNDLPIKHAPTHVCKVCHLVFQSTKTLRMHQKRKHKSFRKSFKHICDHCGMSYEMKNSLVAHIKRKHGPDASPDDREERTCEICALVFKGMTRLRMHMRRKHGSFQESFKHICKDCGLTYDKYRSLIVHIQRKHSNNQKPEINQWYNCPFCPKIFTRRETYSRHVQRKHHVSEESIKQEGKADYLANCKNEETGEITCKECPLVFSSINFLKLHMRRKHNALREDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHVKAIKECNICGLIFASQGGLAKHLRCTHKIDSPKTVFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKIFKAKESYRRHILFKHPTSNHFTSQMQKCEQCSATFKDEFDLCRHINLDHGLPEDMTKEAREMFKIKREDQDIKDSFQCTKCPETYLTWEQLKLHYEATHHNIEETQCQVCGELLPGNELQKHIKNVHKDTEMQCKYCEFKTNIRVSMTQHMLRHKNAETIHCDYTGCKYKTFYEGAMEKHKRKHADQGVKLQCTQCPFQSMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- iTF_00974040;
- 80% Identity
- -