Ople038803.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ochropleura plecta
Gene Symbol
RNF220
Assembly
GCA_905475445.1
Location
FR997751.1:3423831-3468539[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.066 8 8.4 1.6 1 23 228 250 228 250 0.98
2 12 0.0015 0.18 13.6 2.2 1 23 257 280 257 280 0.95
3 12 0.45 54 5.8 1.4 1 23 284 306 284 306 0.89
4 12 0.00096 0.12 14.2 4.4 1 23 311 334 311 334 0.98
5 12 0.00012 0.015 17.0 2.5 1 23 338 361 338 361 0.97
6 12 0.039 4.6 9.1 0.1 3 20 382 399 381 400 0.95
7 12 0.0011 0.13 14.0 0.1 2 23 414 435 413 435 0.97
8 12 6.8e-05 0.0081 17.8 1.5 1 23 454 477 454 477 0.98
9 12 1.1e-05 0.0013 20.3 1.9 2 23 487 508 486 508 0.97
10 12 0.00019 0.023 16.4 1.2 1 23 514 536 514 536 0.98
11 12 2.9e-06 0.00035 22.1 0.3 1 23 542 564 542 564 0.98
12 12 5.7e-06 0.00068 21.2 2.2 1 23 570 593 570 593 0.98

Sequence Information

Coding Sequence
atgAATAAACTACGAATGTGTAGAATATGTTTAATGGAGAATATTCGCATGCACCTCGTTGCCAACAAGAACTTGCAGGAAACATATGAGAAGCTTACTAATATTCCAtttGTAACCGAAGACAGTAGACCGATGTTCGCTTGTTTCTTCTGTTACACCAAACTAAAGCAATGCTGTGAGTTGCAGAGGAAATGTCTGGAAGCAGAGACGCTGCTTGCTGAAATGCTGAATGGAGTATTTTCGGTGACATCAACAAAACTTAAAAACGAACTAGATCATTTTAGTGGATATGTCACTACATCAACTCAACATTTGAGTATAGTTGGTGATCACACAGAGAAGCATGATATCAAAGAGGAACTGGCGGCTGATTGTGATGGAGTATGTGATGACGTTCAGCTCAAGGTGGAACAACTTCATGATGATTCAGAGCCAGAGAATCTAGACAATAGATTCCATGATGTAGATGAGCCATCGCACCAGGCTGCATCAGACTCTGAAGATGATGTACCACTGATGAAGCTCAAGACTGAAGCAGAAGAACAAGAAGTACCTAAGAAGAAGAAAAGGATGAAGAATAAAATACGCAAACCAGATTGTAGTGAAGTACTTCTGAGTACGAAGGAGCAGCAGGACAATCTCTTGGCGAGGGCGAAGTCTTCCAACTACTTACATTCACCGTTTAAATGCGAATCCTGCTACAAAGGCTTTGTCGACACTAGGGCCTATGACAACCATAAGATGAAGCACGATTTGCGCAGTGGAGCTCACGTCTGTAACATATGTCATATGCGCTATCGATCGGCGCAGTTGCTTCGGACGCACGTCAACAACGCACACGCACgcatatttaaatgtaataaatgcgGTTACGTCTCCCATACGGGCAACCAAGCGAGGATACACGAGAAATGGCATGATGGACATATTTATGAATGTCAACTGTGTAGCCACACGTTTAggAAACCGACGTCATATTTATCTCATATGCGAAAGAGGCACCCGACAGAACACGTCTGTAATATTTGTGGAGAGACGTTTGTTGGCAAACATGGTCTGCAGATGCATAAGAGGAAGACCCATATTAATGGGGAgaagATGGTTGACCCCAACGACCCCAATGACCCCGCCCCGAAGAGGTTCTGCGCAGAATGCGACATACAGTTCTATAACTCTGAGGCGTGGAAGCGACATATACTATGCTCTGTCAAACATACGCTTAAGACTGAAGAGAGTACAACCTGCTCAATTTGTCCGTGGAAGTACATCGGTAACGTGTCGCTGGAGACGCATATGAAGGAGCACGCCAAAGCCCTGCGCAGGACTCGGAAGGCACCCGCCACAGCCAAGGAACGTATATTTAGATGTAACCAGTGCGGCTCTAACTTCATGACTCGTTCCAAATTGCAGGCGCACATCAACAGGACCCATTTGGGGctcaaatataacaaaaacattgtctGTGAAGTTTGCGGCAAGAAATGTACCTCAAACGCGACTCTGAAGTACCACCAACGCACCCACACTGGTGAGAAGCCCTACCCCTGCGGCAGCTGCGCGAAGCACTTCGTGGACAGCAACCAGCTGCGCATACACACGCGCACACACACCGGCGAGAAACCGTACGTGTGCGCAGCCTGTGGGAAGAGGTTCACGCAGAAACCGGCGCTCAATAGACACTATAGAGTACACACCGGAGCGAAGCCCTACACCTGCCAATACTGTTCCCGGACATTCAGCCAGTCGAACTCACTGAAACTCCACGTGAAAACCGTACATTTAAAACAACCAGCCAACAATAGGAAGAATAAGACAAAAACCGTAGCTCAAGAAACTAAAATCGAAAAAAATTGTGACGATTTAGAAATTGTTTTAGAAGTGGACAGATTACAGAAGTTGTCTGGAAATGGGTCTAAAAGAAAGTTAAGTGGAAATTCTAGTGGTAATCTAGCTGTGCCAGGCTCTAGTACGAGTTTAGACGTGCCTGAAGAAGAAGTTGATGTTTCTGGCTGTTTAGGAAGTGATGTTTACCAaCGAGTACATTCAAACCGTCTCCGCCGTCTCCGGGCCCGTCGGCGGAGCACCCCGCCGCCACAGCATGGTGAATGCCCTGTCTGTAACACAACATTACCTGTATCGCGGCTCCAGAGACATGCGCTCCGCTGCCTGAAGAGGACTGGGGCGGAGTTGGATGAGGATGTGCCGGACACCAGCTCTGAAGATGGCAGCATTGATGTGGAGAACGACGAGCCCTCAGGCGGGGGCTTCGGGGCCGAGTACCAGTGGTGTGGGGAGTGGCGGGTTCGGGCCACCGCGCTGCAGGACTCCGAAGCTAGAGACGCTACCTGCGTGAGGAGAGCTTCCAACGATCAGGCGCTGGTGGTTGACGGTGACGAAGACGCCGAGTTGTATGGTCCTCCGCAGTATTCGCCCTCCCGGATAGCGCCCGATGCAGAACTAACTCCAGCTGACGAACGCACAGACGCACTGACAGACAGTCAGGAGTCACACGAACAGAGCACTGTCAACGACACAACAGTTTCGCGACCCAGTAGCAAATGTAATGGAATAGTTGAAGCCAGCGCTGAAACAAGAATCCAAGCACTAAAAGCAAGGATTAAAGACTTGGAGAGAAAAACTAATGGCGCTGGAGAGgtatgctggctCCAATCTCTCCGAGCTAAAAAAATCTGTCCACAATGTAATGCAATCACCACAGCGCAGCATCTTCGAAGAATATACATGTAA
Protein Sequence
MNKLRMCRICLMENIRMHLVANKNLQETYEKLTNIPFVTEDSRPMFACFFCYTKLKQCCELQRKCLEAETLLAEMLNGVFSVTSTKLKNELDHFSGYVTTSTQHLSIVGDHTEKHDIKEELAADCDGVCDDVQLKVEQLHDDSEPENLDNRFHDVDEPSHQAASDSEDDVPLMKLKTEAEEQEVPKKKKRMKNKIRKPDCSEVLLSTKEQQDNLLARAKSSNYLHSPFKCESCYKGFVDTRAYDNHKMKHDLRSGAHVCNICHMRYRSAQLLRTHVNNAHARIFKCNKCGYVSHTGNQARIHEKWHDGHIYECQLCSHTFRKPTSYLSHMRKRHPTEHVCNICGETFVGKHGLQMHKRKTHINGEKMVDPNDPNDPAPKRFCAECDIQFYNSEAWKRHILCSVKHTLKTEESTTCSICPWKYIGNVSLETHMKEHAKALRRTRKAPATAKERIFRCNQCGSNFMTRSKLQAHINRTHLGLKYNKNIVCEVCGKKCTSNATLKYHQRTHTGEKPYPCGSCAKHFVDSNQLRIHTRTHTGEKPYVCAACGKRFTQKPALNRHYRVHTGAKPYTCQYCSRTFSQSNSLKLHVKTVHLKQPANNRKNKTKTVAQETKIEKNCDDLEIVLEVDRLQKLSGNGSKRKLSGNSSGNLAVPGSSTSLDVPEEEVDVSGCLGSDVYQRVHSNRLRRLRARRRSTPPPQHGECPVCNTTLPVSRLQRHALRCLKRTGAELDEDVPDTSSEDGSIDVENDEPSGGGFGAEYQWCGEWRVRATALQDSEARDATCVRRASNDQALVVDGDEDAELYGPPQYSPSRIAPDAELTPADERTDALTDSQESHEQSTVNDTTVSRPSSKCNGIVEASAETRIQALKARIKDLERKTNGAGEVCWLQSLRAKKICPQCNAITTAQHLRRIYM*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01084540;
90% Identity
-
80% Identity
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