Ople004562.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ochropleura plecta
Gene Symbol
L
Assembly
GCA_905475445.1
Location
FR997723.1:11097460-11104247[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.65 78 5.3 5.8 1 23 46 68 46 68 0.97
2 16 8.8e-06 0.0011 20.6 4.1 1 23 74 96 74 96 0.99
3 16 2.7e-05 0.0032 19.1 0.1 1 23 102 124 102 124 0.98
4 16 0.0012 0.15 13.8 0.0 2 23 140 162 139 162 0.94
5 16 6.2 7.5e+02 2.2 0.1 9 23 193 208 189 208 0.93
6 16 0.31 38 6.3 0.0 3 23 260 280 259 280 0.97
7 16 0.17 21 7.1 0.0 3 23 294 314 293 314 0.91
8 16 0.00057 0.068 14.9 0.3 1 23 322 345 322 345 0.95
9 16 0.036 4.3 9.2 0.0 1 23 350 373 350 373 0.92
10 16 0.014 1.7 10.5 0.1 1 23 434 458 434 459 0.94
11 16 0.00021 0.025 16.3 0.1 2 23 522 543 521 543 0.96
12 16 0.06 7.2 8.5 0.0 1 23 551 573 551 573 0.98
13 16 0.53 64 5.6 1.2 2 23 581 602 580 603 0.94
14 16 0.91 1.1e+02 4.8 0.3 1 23 680 702 680 702 0.94
15 16 0.0036 0.43 12.4 0.1 1 20 710 729 710 732 0.95
16 16 0.16 19 7.2 0.3 1 23 739 761 739 761 0.94

Sequence Information

Coding Sequence
ATGTTACTCAAAACGTGTTGTTCGCAGCAAAGCCGTTCCGGTGAACATTACCCATCAAATCCATCTCTCTGTGATAAGCGCGCTGCTCCCGCGCTGGAATGTTATCGGTTACAGACCCATTCGGATCAGATGCCGTTCAGGTGTGAGTTTTGCTCGCGCCTGTTCAAGCACAAGCGTTCTCGCGACCGCCATGTCAAGCTGCATACCGGGGACCGCAAGTACCGCTGTGCACACTGCGAATCTGCCTTCTCCAGGAGTGACCACTTAAAGATCCACATGAAGACGCACGACAACCAGAAGCCATTCCAGTGTACCGTGTGCAACCGAGGGTACAACACGGCAGCCGCTCTGACGTCACACATGCAGGGACACAAGAGAGACCGTGAGGGTCGGGAGCCCGACAGACGTAGAGCTCTGCGCTGTCTGCGGTGCGGGGATGCTTTCCGACGACCAGACCTGCTGCAGGCGCACATGGTGAGCGCACACGGCGTGGACACTCCCGCAATGACTCCACCGCGACGCGTTGCTTCTCAACCGCCGCCCACGCTACTCGCCTGCATCTATTGCACTCGCGATACATTTACCAGTATGGAGCAGTTGCAACTTCATGTGCGAGCAGCACACTCAGCCCTGCTGAATGGAGAAGGACCAGCCCAAGTAGATCAGCCTGCGCCGACGGATCTAAGCCGACGTGCGCCTGACGAAGTTCCCGCAGTCAAGCGTCCTCGTTCCGGCTCTGGCACACCACAAACAAATTTATCACCGAGCACACTGCTCTGTAATCAATGTGATGCTGCGCTCCCAGATTTTGAAGCATTTCGGGCTCATTTAAAAGGTCACATTGAAGAAGGAGGGGAGCTGCGATCAAGTCCTGCTCCTTGCGTTCACTGCGGCGCTACGTTCGCGGACGCTGCAGCTTCGGAACGTCACCTCACAGCGCATTACCTGGCGGTCTCGTGCGAGTATACCTGCCACAGCTGCGCTCGGAGCTTTGCTGCTCCTGACGATTTGCAGAAACATTTGCTTGAACTGCACGCGCATCATCTGTATAGATGTGCTCTTTGCAAGGAAGTTTTTGATTCAAAAGTCGCAATTCAGGTGCACTTCGCGGTTGCACATAGTGGTGAAAACAAAGTGTGGGTATGTCGTTCATGTGGTGCGGGCGCAGGCGCTCTTCGCTCCGAGGCTGAGGGTGCGGCCCATGTACGCTCTCTTCACGCGGCCGCAGCCCCACGCTGTGCATGTGGAGCCCTACTCGGCAGTGGTGTCGCTGCGAGGACTCCTCGACCCCACCGCGCGTATCGATGCCCCGTGCCTGCCTGCAATGATGCATTTGCTGTGCAGTACTTGCTTGAACGACATATGCAGGCTCACCATGCAATGCAACAGCAGGTTCTAAACGGTGACTTAGCCAGAACAAAACGAATGGACTCAACGAACGGCGGTGAGGGTGGTGAGGACGCTCGCTCCCCATGTTCACCTGGAGCAGAGGGTGGCGGTGTGACCACGGCGGTGGTAGCGGCAAGTGAGGAGCGACGGCGGAAAAACGGCGCCGTAGCCTTGCAGTGTGCTTACTGTGGGGAGCGCACGAGGAGTAGGGCAGAACTAGAGGCACACACACGAGCTCATTCAGGGGCCGCAGCGGCGAGGCATAAGTGTCTGATTTGTGATGAAGTGCTGCCGTCTGCGGCGGTGCTTGCCGAGCATAAGCTTACACACTGCAAAGTGGTATCAGGAGACACATGCTCCCGATGCCGCGCGCGGCTGGTGTCGGAGGACTCGTTCCTGAGCCACATGGCGCGACACCACCCCGCGCTGCCGGCGCCGTGCGTCGTGTGCCGGCAGACCCTCGCTTCAGAAGCAGAAGCAAGACTCCACGCGCGCTTCCATCTGCGACCCGGGGAGGATGAGCAGAGgtGCGCTATATGTCTCCGCGCGCTGCCGGAGGGCGAGGCGGGCTCGGGCGCGCGCGCGTGCTCCGCGTGCTACGCGCGCCACGCGGCGCCGcgcgccccgcgccccccgccgcCCGCGGACCACGACTGCCGCCTGTGCCGCCGCGCCCTCGGGTCCCCCACGCGCCTGCAAGCGCACCTCATCGAGCACACGTTCGCGGGGATCGGCGCCTTCACGTGCTACCTGTGCTCCGCGGTGTTCACGAGCGCGGCCGGCCTGCAGCGCCACCTGCCGGAGCATGCGTCCGCACCGCGCCCCTACGACTGCGCCAGATGTGGACTCAAGTTCTTCTTCCGAGCAGAACTTGATAATCACGCATTTGTGCATCTTGAAGAGGCAGAGATAGCGCAGCGAGCTTTCTATGAAGCGTACGCTCGCGGGGCTGCATCAGCGTGGGCTGCGCTGGCACCGCCCGAACCACGAACGTCTCCGCCACAAGCCGAGGTCAAGCGCGAGCCGGAGATTAAAGAGGAGCGAGGAACTGACGAGTATATTGAGGTGTCGTCCCCGCCCCCCGCGGCCccggcgcccgcgccccccaCCCCGCCCTCGCCCGCACCGGTCGTGAAGCAAGAGAAGCCTGACGAAGAGTAG
Protein Sequence
MLLKTCCSQQSRSGEHYPSNPSLCDKRAAPALECYRLQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMVSAHGVDTPAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGEGPAQVDQPAPTDLSRRAPDEVPAVKRPRSGSGTPQTNLSPSTLLCNQCDAALPDFEAFRAHLKGHIEEGGELRSSPAPCVHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFAAPDDLQKHLLELHAHHLYRCALCKEVFDSKVAIQVHFAVAHSGENKVWVCRSCGAGAGALRSEAEGAAHVRSLHAAAAPRCACGALLGSGVAARTPRPHRAYRCPVPACNDAFAVQYLLERHMQAHHAMQQQVLNGDLARTKRMDSTNGGEGGEDARSPCSPGAEGGGVTTAVVAASEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVSGDTCSRCRARLVSEDSFLSHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPGEDEQRCAICLRALPEGEAGSGARACSACYARHAAPRAPRPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPRTSPPQAEVKREPEIKEERGTDEYIEVSSPPPAAPAPAPPTPPSPAPVVKQEKPDEE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437318;
90% Identity
iTF_00822228;
80% Identity
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