Basic Information

Insect: Ochropleura plecta
Gene Symbol: -
Assembly: GCA_905475445.1
Location: FR997749.1:9022302-9026038[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0055 0.66 11.8 0.4 1 23 47 69 47 70 0.95

2 15 0.11 13 7.7 0.1 2 23 97 118 96 118 0.96

3 15 0.011 1.3 10.9 1.2 1 23 140 162 140 162 0.99

4 15 1.6e-05 0.002 19.7 1.0 1 23 166 188 166 188 0.98

5 15 4.9 5.8e+02 2.5 0.1 1 11 193 203 193 206 0.82

6 15 0.094 11 7.9 0.3 1 23 242 264 242 264 0.96

7 15 3.4 4.1e+02 3.0 0.8 2 23 288 310 287 310 0.89

8 15 3.7e-05 0.0045 18.6 3.5 1 23 332 354 332 354 0.99

9 15 0.0004 0.048 15.4 0.3 3 23 360 380 358 380 0.97

10 15 0.024 2.8 9.8 2.2 1 23 388 411 388 411 0.89

11 15 0.004 0.48 12.2 1.2 1 23 417 440 417 440 0.98

12 15 0.02 2.4 10.0 1.1 1 23 446 469 446 469 0.96

13 15 2.6e-05 0.0031 19.1 0.5 1 23 475 497 475 497 0.97

14 15 2e-06 0.00024 22.6 0.8 1 23 503 525 503 525 0.99

15 15 0.00028 0.034 15.9 4.5 1 23 531 553 531 554 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0055	0.66	11.8	0.4	1	23	47	69	47	70	0.95
2	15	0.11	13	7.7	0.1	2	23	97	118	96	118	0.96
3	15	0.011	1.3	10.9	1.2	1	23	140	162	140	162	0.99
4	15	1.6e-05	0.002	19.7	1.0	1	23	166	188	166	188	0.98
5	15	4.9	5.8e+02	2.5	0.1	1	11	193	203	193	206	0.82
6	15	0.094	11	7.9	0.3	1	23	242	264	242	264	0.96
7	15	3.4	4.1e+02	3.0	0.8	2	23	288	310	287	310	0.89
8	15	3.7e-05	0.0045	18.6	3.5	1	23	332	354	332	354	0.99
9	15	0.0004	0.048	15.4	0.3	3	23	360	380	358	380	0.97
10	15	0.024	2.8	9.8	2.2	1	23	388	411	388	411	0.89
11	15	0.004	0.48	12.2	1.2	1	23	417	440	417	440	0.98
12	15	0.02	2.4	10.0	1.1	1	23	446	469	446	469	0.96
13	15	2.6e-05	0.0031	19.1	0.5	1	23	475	497	475	497	0.97
14	15	2e-06	0.00024	22.6	0.8	1	23	503	525	503	525	0.99
15	15	0.00028	0.034	15.9	4.5	1	23	531	553	531	554	0.96

Sequence Information

Coding Sequence: ATGCGCAGACGACGACGCGCGAACAACCAGCTCCCAGAAGAATCGGAGAAACGAATCTCCAAAACCATGATGCGGCGAAATGCCATGATCTTTCTAGAATGTTCTACAGCCTGGGCCTTTAGGTGGTTCCATAGCGCTTTTTACTGTTCTTACTGCGATGCTAAATTCGTCGATGTACCCCCTCTTCGTTCCCATGTTAAAGCTCATCACCTGAACGAGTTACCAACTGAAAGAATCTTCTCgaagttaaaagaaaataacatgCTCAAAGTAGATGTAGCGGAACTAAGTTGTAGGTTGTGTGGCAGGCTTCTAAATAGCATTGACGCTTTAAAAGATCACCTACTAATTCATGGAAAGACTCTGAACGTAGAATACAGTGATGGTGTCCTCCCATTTAAGTTAGATGAAGAAGGATTCACTTGCCAGCTTTGCTTCGCCCAATTCGAAACTTTCGCCAAAATGAATGAGCACATGAACACACACTTTCAAAACTACATCTGCGATTCTTGCGGGAAAGCTTTTGTTTCTAAATCAAGGTTTAGAAAACATGTACAGTCTCATGAAAAGGGCAGTTTCCCTTGCGGGGAGTGTGGGGAGGTTTTAGAAACACggcCCGTAATTTGGACGAGGCTGAACCGCAAGTATAATGATCACAGAGCTAATGCCGCTATCATTCTTGAAAGTTCCAACGCTTGCCCATTTAGGTGGAGGCGGGGCACCTTCACCTGCGCCTCCTGTCCGCTCTCCTTCGGGGATTTTAGCAGTGTCAAGGAGCATAATAAAGAACACCCTAATTGCCACGAAGCTCTGCGAAAGGCTCGACCGTTTTGCAATGTCAAAATAGAAGTCACTGAGCTACGATGCGAACTATGTCTAAGCCGAATGACAAGCTTAGACAATCTCTGCCAACATTTAATCGAAGATCACAATAAACCAATCATCTCCAAAATTGGTATAGGAGTCACACCGTACTACCTGTCAGGAAAAGAATACAAATGCACTCATTGTGATGAAACTTTTGTCCTTTTCTCTAAATTGAACTCGCATTTGAACACACACTATCCAAACAGCATCTGTTTTCAATGCGGCAAAGCTTTCTCTTCGGTACCCAGATTAAAATCACATTTGCTCACACACGATTCGCCAGCCACAACCAAATACAACTGTACTAAATGCGATCAAAGCTTCCCTACGCGTGTCTTAAAAAACAATCACTTTAGCCAAAAACACGGTCCAGAACGCAGATACAGGTGTCCTTATTGCAAAGATACATTTAAAAGCTACGCAGATAGAGGGAAGCATTTAAAAACTGCGCACGACAAGAAGATCGAGTACCCATGCAACTTTTGTCCAGCAGTTTTCGCCATGTGCAATCAGAGAACAAAACATATAAAGCAAGTTCACATGGGTATAAAATCCTTTGCGTGCGAGTTTTGCTCATACAAATTCGTGACGGCTGCGCAGCTAAGAAATCATATGATCAAGCATGGAGGTGAAAGGAAATATCAGTGTGAAGTATGTAAAAAGGCATATGCTAGAACCAAAACTCTGCGCGAACATATGAGGATACATAATAACGATAAACGATTTGTTTGTCAGTATTGTGATTCTGCGTATGTCCAAAAATGTAGTTTACAAAGTCATTTGAGAACGCACCATCCTACAGCTGAGCCTCTAATAAAGGTTAAGCTGcctaatatttgtaaataa
Protein Sequence: MRRRRRANNQLPEESEKRISKTMMRRNAMIFLECSTAWAFRWFHSAFYCSYCDAKFVDVPPLRSHVKAHHLNELPTERIFSKLKENNMLKVDVAELSCRLCGRLLNSIDALKDHLLIHGKTLNVEYSDGVLPFKLDEEGFTCQLCFAQFETFAKMNEHMNTHFQNYICDSCGKAFVSKSRFRKHVQSHEKGSFPCGECGEVLETRPVIWTRLNRKYNDHRANAAIILESSNACPFRWRRGTFTCASCPLSFGDFSSVKEHNKEHPNCHEALRKARPFCNVKIEVTELRCELCLSRMTSLDNLCQHLIEDHNKPIISKIGIGVTPYYLSGKEYKCTHCDETFVLFSKLNSHLNTHYPNSICFQCGKAFSSVPRLKSHLLTHDSPATTKYNCTKCDQSFPTRVLKNNHFSQKHGPERRYRCPYCKDTFKSYADRGKHLKTAHDKKIEYPCNFCPAVFAMCNQRTKHIKQVHMGIKSFACEFCSYKFVTAAQLRNHMIKHGGERKYQCEVCKKAYARTKTLREHMRIHNNDKRFVCQYCDSAYVQKCSLQSHLRTHHPTAEPLIKVKLPNICK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00041109;
90% Identity: -
80% Identity: -