Ople037368.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ochropleura plecta
Gene Symbol
-
Assembly
GCA_905475445.1
Location
FR997749.1:7960555-7964309[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.23 28 6.7 0.4 1 23 100 123 100 123 0.91
2 20 0.34 40 6.2 0.0 2 23 150 172 149 172 0.95
3 20 0.056 6.7 8.6 0.4 2 23 195 216 194 216 0.96
4 20 0.037 4.4 9.2 0.4 1 23 220 242 220 242 0.97
5 20 0.31 38 6.3 5.9 1 19 247 265 247 270 0.88
6 20 0.0027 0.32 12.8 1.5 2 23 278 300 277 300 0.95
7 20 0.00062 0.074 14.8 2.1 1 23 307 330 307 330 0.96
8 20 0.0038 0.46 12.3 3.4 1 23 336 358 336 358 0.98
9 20 4.3e-06 0.00051 21.6 1.1 1 23 364 386 364 386 0.98
10 20 0.031 3.8 9.4 0.2 1 17 392 408 392 409 0.94
11 20 0.019 2.3 10.1 0.7 1 23 501 524 501 524 0.91
12 20 0.067 8 8.4 0.0 2 23 551 573 550 573 0.96
13 20 0.00017 0.021 16.5 0.4 1 23 595 617 595 617 0.98
14 20 0.00069 0.083 14.6 0.7 1 23 621 643 621 643 0.98
15 20 7 8.4e+02 2.0 3.5 1 14 648 661 648 671 0.88
16 20 0.01 1.2 11.0 2.5 2 23 679 701 678 701 0.95
17 20 0.00015 0.018 16.7 2.4 2 23 709 731 708 731 0.95
18 20 0.00038 0.046 15.4 2.1 2 23 738 759 738 759 0.97
19 20 1.7e-05 0.002 19.7 2.5 1 23 765 787 765 787 0.99
20 20 8.8e-05 0.011 17.5 3.4 1 23 793 816 793 816 0.98

Sequence Information

Coding Sequence
ATGCTATATCAATCTTATGCTAAGCATCACTTAGACGTTCTTTTACATCAACAGGGAAGAAGGCTGACAAGTCTGGGCTGCGAAACAGAAATAAATTTAGAAACAGACGTAAGTAAAATAATGAAAGCTATCAAATCTCCAAGATCTGCTATCGACAGAGAAGCGTTCAAAGAAAACTTATTAAAGGTTCGATCTCCTAAATCAGCAGACAAAGAAATAGACAAACATTTGCAGAATATTCGAAACATTCTCTTTTATTCGAATGCCACTCCTATCAGAAAACACACAGGGCATGGTTATTTATGCGCCTTCTGTTCTAAATACTTTAATTTACCGATAGACCTCAAACTACATACACTAGAAAATCATGACAACGAAACTAAAAGCCGTTTCATGAAAGGCTGCATCATCTTTAACTACGTCGTTAAACTTGACATTACTGGTTTGCAATGTGAAATATGTGATGAAGATATTGATGGATTAGAATCACTGATGGATCACTTACAGTCTGTTCACTATAAAATCATACATAGAGACATCAAAAATCATATCTTGCCTTTTAAATTTGATAGTGACGAGTTAAGGTGTGCGCTATGCCCTAATATCTACGACCACTTCAAAGGGCTACAGGAACACATGAATGTGCACTACAGTAATTACAACTGCGGAGTTTGTAACGCACCTTTCCTTAATAAACGTACCTTAAAAAGTCATACAGCCCGACACAAACAAGGGGAGTTCTCTTGTAAGTTTTGTGGAAAAGTGTTTGACACAAATATCAAGCTACGGTGCCATGAAAGATGCACACATACTCAAGATCAGAAACGAAATAAATGTCCACATTGCGATGAGAAATTCGCTAGCTACACACAGAGGAATGAACATATGGTGAAAGAGCATGGCGCAAAACCTCTCGTCTTCGAATGCCTCGCCTGTGACAAGAAGTACAGTACCAAAGAATCattatataaacataaaaaacgGGATCACTTACTTGAAAGGACACACGAATGCCAGCAATGTGACATGAAGTTCTTTATAAAGAAGACACTGAATATGCACATGTTAACACATACAGGAGTAAAACGTTTTAGTTGTGATATTTGTTTGAAGGCTTTTGCTCGGAAGGATCATTTAACAGAACATTTGAAGATACATGCCGAGGACAGAAAATTTCGTTGCGATTTGTGCGGGCTAGCGTTTGTGCAGAAATTCAGTTTGAAAGGTCTCGGCTGCCATACAGAAATTAAATTAGAAACTCAtgtaagtaaaatattaaacacacTCAGTGCACCGAGACCTACACGAGCAAACGAAAACCACGTTGATTGGACGGTAACTGTCGCGAAAAAAGGTCGTTTAAAGGCGATCAAAGAAGAAATATTAACGGTCCGTCCACTCAAGGCAGACAAAAGAGAGATAGATAAACATTTGCAAAATATTCGTAATATACTCTTATTTTCTAATGCTACCCCTATCAGAAGTTACACAGGAAATGGTTACTTGTGCGGCTTCTGTCCAGAACACTTCACCATGCCAGGAGACCTTAAGATACATTCCCAGCAAAAACatgataacaaaacaaaaagcacATTCATGAGAGGCTACCCATTAAGTTCATACGTCGTTAAAGTAGACATAACTGGTTTGAAATGTGAAATATGCGGTCAGGATATTGATGGATTAGAACAACTGATGACTCATTTACAATCtgaacacaataaaattatacataCGGATGTCAAAAATCATATTCTGCCTTTTAATCTAGATGGAGACACGTTCAAGTGCGTGCTATGCCCTAAAATCTACGAACGCTTTAAGCTTCTACAAGAACATATGAACGTacactataataattataactgcGAATCCTGCAACTCTCCTTTTGTAAACAAGAGAACCCTTAACAGTCATATGGCTCGACATAAACAAGGAGAGTTCTTTTGTTCGTTTTGTTCAAAAGTATTTGATACAAATGGCAAAAAATTATGCCACGAAAAATTTGTACATATAGGCGATCATAGACGAAACAAGTGCCCACACTGCCAAGAAAAATTCACGACGTACGCAAAGAAAAATGAACATATGGTGAAAGAGCATGGTGCAAATCCTCGTGTTCTCAAATGTATGGCCTGTGATAAGACGTTCACAAGAAGAGACAGGTTGACTCGACATACTAAACGGGATCATTTACTTGAAAGGAAAAATGAATGTGAGCACTGTGATATGAAATTTTATGGGAAGAAAGAACTGAATATGCACATGTTAAAACATACAGGCGAAAAACAGTATAGGTGCGATGTCTGTTTCAAAGCTTTTGGACGTAAACATACATTAAGAGAACATTTAAGAATACATGCGGATGACAGGAGATTTAAATGTCAACTGTGTGGACAAGCGTTTGTGCAGAAATGCAGCTGGAAAAACCACATGAAATCGAGACATGATGAATTGGTTTGA
Protein Sequence
MLYQSYAKHHLDVLLHQQGRRLTSLGCETEINLETDVSKIMKAIKSPRSAIDREAFKENLLKVRSPKSADKEIDKHLQNIRNILFYSNATPIRKHTGHGYLCAFCSKYFNLPIDLKLHTLENHDNETKSRFMKGCIIFNYVVKLDITGLQCEICDEDIDGLESLMDHLQSVHYKIIHRDIKNHILPFKFDSDELRCALCPNIYDHFKGLQEHMNVHYSNYNCGVCNAPFLNKRTLKSHTARHKQGEFSCKFCGKVFDTNIKLRCHERCTHTQDQKRNKCPHCDEKFASYTQRNEHMVKEHGAKPLVFECLACDKKYSTKESLYKHKKRDHLLERTHECQQCDMKFFIKKTLNMHMLTHTGVKRFSCDICLKAFARKDHLTEHLKIHAEDRKFRCDLCGLAFVQKFSLKGLGCHTEIKLETHVSKILNTLSAPRPTRANENHVDWTVTVAKKGRLKAIKEEILTVRPLKADKREIDKHLQNIRNILLFSNATPIRSYTGNGYLCGFCPEHFTMPGDLKIHSQQKHDNKTKSTFMRGYPLSSYVVKVDITGLKCEICGQDIDGLEQLMTHLQSEHNKIIHTDVKNHILPFNLDGDTFKCVLCPKIYERFKLLQEHMNVHYNNYNCESCNSPFVNKRTLNSHMARHKQGEFFCSFCSKVFDTNGKKLCHEKFVHIGDHRRNKCPHCQEKFTTYAKKNEHMVKEHGANPRVLKCMACDKTFTRRDRLTRHTKRDHLLERKNECEHCDMKFYGKKELNMHMLKHTGEKQYRCDVCFKAFGRKHTLREHLRIHADDRRFKCQLCGQAFVQKCSWKNHMKSRHDELV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01535152;
90% Identity
-
80% Identity
-