Ople025320.1
Basic Information
- Insect
- Ochropleura plecta
- Gene Symbol
- -
- Assembly
- GCA_905475445.1
- Location
- FR997738.1:12178076-12182524[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.97 4.2e+02 2.0 0.0 21 31 169 179 162 186 0.82 2 2 4.2e-07 0.00018 22.4 0.0 3 39 454 490 453 493 0.94
Sequence Information
- Coding Sequence
- ATGTTGCCTAGTGCTGGCATTGTATGTTTAGTGTGTAATCGTTCAGTGTTACGAAGAGAAAGGCAAAATGTTACCCGAAATCTGTTCGAGTCAAACCCAGCCATCTCAGCCCATATACTCGCATCAATTGCACCGCGACAGgttaTATTCAACGGCAGAGAATACGTCTGTCGTCCATGCTGGTTAAGGAGTCAAAGAGCTCAGGGTCAGGGTGCTATGCAAGATCTTTTGCCAGGACCTTCAACACCACGAGAAGATGCAGTTGGAAATATAGATCAGGACGAAGTACAGCAACCTGATTTACTTCAGTCATTAAATCTGTCGGAGTTATCTCGTGCTCCTAATACAGCAaatgcatACGAATTGCATTACTGGACCGGGCGGACTCTCGAAGAATTCAACGTAATTCTAGCTGAAACACCATCTTTGAGTAGAAGGAGTACCCagccaaagaaaatattaggAATGTACCTATCAAAACTCAGAAGTGGAGAATCGGATGACAGGCTAGCGACTCTGTATGGCATAAGCCGAAGACACTTTGAGAGGCTCGTAACGGCACAAGAGTGTCTATTAGAAGACTTTGTGCCTCAATATTTAGGATTTAGGGACGCCTTGCCAGATTTTAGAAGTTTCGGCTACATAACTCATACGCCTGAGTCTTTACATCCCGGAGAAACTCAACTAACCACCATGCAGGCTAATAAGTCCAGAAAAGTAACCATGGTccgctgggttgtggagatcgtTTTCGGACGCATCAAGCGTGACTTTAAACTACTAAGGCAAGAATATTTCAACGTTGCCCTGAAACACCTATTCCCGAATTTTAGAATAGCTGCTGCGTTGTTGAATGCTTTCCACATGCCAGTGCATGACAGCGTATATGCTGACCGGTTTATTGAAATCATTAACCAGCGTATGAATATGCCTAATAATCTAGCAGAATATGTAACGGCCAGTAACATGAACAGACGGCGTGCAGCTTTCACAACGATTTCGGGGGATCTTCCAGAATTGAGAGGGTTCCCACGGTTGTCAGAAGAAGATTTAATAATATTCGCCCTCGGAACTTATCAACTAAAGCTAGCGCGTAGCTACTATAGTGAGCACGTCCGTGGTGGTATATACAGTATAGATATTTATCGTGACGGTGCACCACCCGCAGGATTAGAGCGACATAATATTACGGAACCAAACTTAACACTGTTACGAGGGCGGATACAGTCACGCCACGTCAGGTTAAGAACCTATTACACATACATAATGTATGGAGAAGAAGCTGCAGGATTGGATTCCATACGatgtcaAAATGCCAAGAAAAAGGGACGCACCACTACAAAAGCGTCTTGGAACATTGAAAGTTTAGAAAACGCAGTCGAAAAACTTCGGCGTGGTGGTATCTCAGTCTACAAGGTTTCAAAAGAGACTGGAATACCCTACAGCACCCTAAAAAAGAGATTCAGGTTAGCTAAATTTAACGATACTAGCTACAAATGTCCTCCAAAACTCGGAAGGCCCTCTGTGTTTACTGTGGAACAAGAAGCCATTCTGGCTGATCATCTAcaacaaatgtcaaataaattttatgaaCTGACGAGGGCTCAGTTTTGTAAGGTATGTTACGCCATGGCTGAAAAAATTGGAGTTGCAGATCGATTTAATGAAACCAAAAAGTCTGCAGGCAGAGACTTTCTAAATGGCTTTTTCCAACGACATCCTAATCTAAGTACTAGAAAGCCAGAAGCGACAAGCATCAATAGGATACTTGGGTTCGATAAAGCTGAAGTGGATCGGTTCTTTGAAAATCTGGAAAATGTCATGACAAAATACCACTTCCCGCCGTCTCATATTTACAATATGGACGAGACTGGCGTAACGACAGTGCAGGAAACCGAAAAAAATATAGCGCCTAAGGGACAAAAACGTGTAGGAACAGTCACATCTTGGGAAAGAGGTAAAAACGCATTCCGCCTCTATTTATTTTCCCTCGACAGCGTCACTCACCGCAACTAG
- Protein Sequence
- MLPSAGIVCLVCNRSVLRRERQNVTRNLFESNPAISAHILASIAPRQVIFNGREYVCRPCWLRSQRAQGQGAMQDLLPGPSTPREDAVGNIDQDEVQQPDLLQSLNLSELSRAPNTANAYELHYWTGRTLEEFNVILAETPSLSRRSTQPKKILGMYLSKLRSGESDDRLATLYGISRRHFERLVTAQECLLEDFVPQYLGFRDALPDFRSFGYITHTPESLHPGETQLTTMQANKSRKVTMVRWVVEIVFGRIKRDFKLLRQEYFNVALKHLFPNFRIAAALLNAFHMPVHDSVYADRFIEIINQRMNMPNNLAEYVTASNMNRRRAAFTTISGDLPELRGFPRLSEEDLIIFALGTYQLKLARSYYSEHVRGGIYSIDIYRDGAPPAGLERHNITEPNLTLLRGRIQSRHVRLRTYYTYIMYGEEAAGLDSIRCQNAKKKGRTTTKASWNIESLENAVEKLRRGGISVYKVSKETGIPYSTLKKRFRLAKFNDTSYKCPPKLGRPSVFTVEQEAILADHLQQMSNKFYELTRAQFCKVCYAMAEKIGVADRFNETKKSAGRDFLNGFFQRHPNLSTRKPEATSINRILGFDKAEVDRFFENLENVMTKYHFPPSHIYNMDETGVTTVQETEKNIAPKGQKRVGTVTSWERGKNAFRLYLFSLDSVTHRN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -