Ople008829.1
Basic Information
- Insect
- Ochropleura plecta
- Gene Symbol
- -
- Assembly
- GCA_905475445.1
- Location
- FR997724.1:19362500-19362904[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.4e-09 3.2e-06 28.0 0.0 11 37 21 48 14 51 0.86
Sequence Information
- Coding Sequence
- ATGTCTTcaagattaaatagaaaaacatggGATAGCAAATCCATGAAAATTGCCTATCTTGCtgtgaaaaacaaagaaatgggGTATCTTAAGGCTTCGAAATTATATGGTGTTCCCAAAAGCACTTTAGAAGACTATGTTAAGAGTCCCAAGGACATAGATGAGCTCCTGGCAACTAAATTAGGCAGAAAACCTACATTTGACAAGGAAATAGAAGAAGAATTAGTTGAATACTGCCTTGAGAtggtaaaaaaatactatgggCTTCGGGCAAATGATATAAAACACATTGCATTTGAACTCGctgtaaaaaataacattccGCATCAGTTCTCCCACAAGGGTCAGGCTGGAAAAAAGTGGCTTgctagtttttttaaagaggCACCCACAACTTGCTTTTAG
- Protein Sequence
- MSSRLNRKTWDSKSMKIAYLAVKNKEMGYLKASKLYGVPKSTLEDYVKSPKDIDELLATKLGRKPTFDKEIEEELVEYCLEMVKKYYGLRANDIKHIAFELAVKNNIPHQFSHKGQAGKKWLASFFKEAPTTCF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00300126;
- 90% Identity
- iTF_00300138; iTF_00300139; iTF_00300140; iTF_00300141; iTF_00300142; iTF_01085114;
- 80% Identity
- iTF_01085114;