Ople037159.1
Basic Information
- Insect
- Ochropleura plecta
- Gene Symbol
- -
- Assembly
- GCA_905475445.1
- Location
- FR997749.1:6281251-6281805[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-11 4.3e-09 37.2 0.0 2 40 18 55 17 59 0.89 2 2 5 2.1e+03 -0.2 0.1 13 22 125 135 123 136 0.76
Sequence Information
- Coding Sequence
- ATGCCTTTAACATATAAGAGGAAAAGTGGAGTATGTAGAGGGGAATGGACAGAAAGTGCATTAACTCATGCTTTTCAAGCTGTTTCTAATGGAATGGGTATCAATGAAGCAGCAAAAACATTTGGGATACCAAAAACTACATTTAAGCGAAGacttgcaaaaaataactttattaaaagCGATGTTCTCGGTCCGAGTGGTATACTGCTGCCTGAAAATGAGAAGAAGATCGTCATGCACATTACAGTGCGTAAAATAGCTTATAATTTAGCGGAAAGACTCTATATTAAACATAACTTTAATCACGAAAAGAAAATGGCGGAAAATGGGTGGTTGAAAAGCTTTCTTACACGAAACATTGAACTTTCAATCCAACAGTCAGAAGGTGTCTCTGTATCTAGGGCCAAGGGGATGAATAAAGAATATGTTGATAAGTATTTCAACCTTTTAGAAGAAGTTTTGAAAGAAAATGAACTTTTTGACAAACCCGGCTCTATTTTTAATATGGACGAGACAGGCTTGCAAGCGTTGTTCTTGATACGGCAATTGCCGTAA
- Protein Sequence
- MPLTYKRKSGVCRGEWTESALTHAFQAVSNGMGINEAAKTFGIPKTTFKRRLAKNNFIKSDVLGPSGILLPENEKKIVMHITVRKIAYNLAERLYIKHNFNHEKKMAENGWLKSFLTRNIELSIQQSEGVSVSRAKGMNKEYVDKYFNLLEEVLKENELFDKPGSIFNMDETGLQALFLIRQLP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -