Oleu001423.2
Basic Information
- Insect
- Ochropleura leucogaster
- Gene Symbol
- -
- Assembly
- GCA_958449745.1
- Location
- OY288201.1:3839805-3864625[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.8 1.4e+02 3.9 1.5 1 23 203 225 203 225 0.93 2 11 0.0042 0.34 12.2 7.9 1 23 232 255 232 255 0.96 3 11 2.5e-05 0.002 19.2 2.0 1 23 286 309 286 309 0.98 4 11 1.2 96 4.4 0.1 2 23 318 340 317 340 0.92 5 11 0.0087 0.69 11.2 0.1 2 20 351 369 351 371 0.94 6 11 1.6e-05 0.0012 19.8 0.6 3 23 718 738 718 738 0.99 7 11 2.9 2.3e+02 3.2 0.4 3 23 754 775 753 775 0.93 8 11 0.0011 0.086 14.0 4.0 1 23 792 814 792 814 0.99 9 11 2.6e-05 0.0021 19.1 0.2 1 23 820 842 820 842 0.98 10 11 3.9e-06 0.00031 21.7 3.1 1 23 848 870 848 870 0.98 11 11 0.00084 0.067 14.4 2.4 1 23 876 899 876 899 0.96
Sequence Information
- Coding Sequence
- ATGgatgaattaaaatattgcCGAGTATGTCTTGAGACTGATGTGAAGATGTTCAGCTTGGAAACTAAGTCAAGCGATTCCATCGGTTCTGTTTACTCACATTTAGCGCAGATTCCGATAACAAGGCAAACCCTCAAAAATGTAGATAGGAAGTTAAATAAATTGGAGTCTACTCTAAAAGTAtctcctgtagtttttgtttatgAAGAATTAAATAGCACAGATTCTGAAATCTGCGTTAAAATTGAAGATGAACAATACATCAAAACAGAGAATTTCAAAAACACCGAAATAGATAATAAACATGATAGTAATGAAGAATTTACTGAAGACTACATAGATTCTATGGTAGAATCAGTCGCAGAACATAATGAATatcgaaaaactaaaaaaaggaaaataaagaagGGTGATGATGATTCTAGCGATGATGAGCCTTTAGCGAAAAATGCAACAAAGTCTGTAATCACAGAtcccaaaataaataagaagagttttaattttagtttcttCGATGACTATGCAACCGTTGTGTTTATGACTCCTGAAGATGCCAAAAGGGAGGTTCTATTAAGAAAAGAGTCCAGTAACTATAAAACTTCACCATTCAAGTGTGATTTATGCTACAGGGgatttgaattaaaaacaacatcTGAAAATCATGCTAAGAAACATAGGCCTgAATACGGAGACTATGAATGTGATATCTGCCACATCAGGTTTCCTCAACAAGTGCACTTGTGCAAACATAAGCTGTCATGTCATAAGAGAAAGTTTAGCTGTAAACTGTGCTCATACATTTGTTACTGCACTGAACAAGCAAAATCTCATGTAAGTCTACATAAAGGAATGAAATATCCGTGTAAACACTGTGGAGAAATATTCAGcatgTCAAATAGTTTACAGATGCATTACCGTATGAAGCATTTGAAGGAGTCTGTATGTGAAAGCGTTTGTGAGTTTTGTGGAGATATCTTTGGCACGCCAAAGGGACTGTTCTTACACAACTCTAAACTGCATAGGCAGgataAAAACGACAAGCTTGGCCCCGAGTGTAGCGACTGTGGTGTACACTTCACATCAGAGGTGGCGTGGAAGCGACATCTAGTGAAATCTACGAAACATAAAGTCAaTCGACAGAGAATAAGTTACAGCCAGCTCGAAGCCATGTGGgagattgtaaataaaaatagagaGCTTGCAACTGGCTATAATAAGACTTCCGAGGCCAGAGAATTTGCAAAGCGAATGTGGAAGATGGCGGCCGTTACTTTAAATTCCATAGACGGAGGTGCTGAAAAGGATTGGAAGAGCTGGTGTAAATACTGGAATGATTATAAATGTAAACTCAGAAATAAGATTGCCAGTGCACGGGCCGCTGTGCACATTACTGGTGGTGGGCCATCTGATGAAGGAAGACTGTCTGAACTTGATCTTAAATTCCTTCAAATATTGGGCGAGGATTTAGGGTTCACAGGAGTGAAACCATTTTGTAATTCCACCACCTCCGCTGTCGGCGACGACCCCGCTTCCTCCGCCACCCCCGCCATCGGCAACGACCCCGCTCAGTGCACCACCTCCGCTGTCAGCGACGACCCCGCCCCCTCCGCCACCCCCGCCATCGGCGACGTCCCCGCTTCCGCTGCCAGCTCCGCCATTCACGACGGCCCCGCTCTCTCCGCCACCCCAGCCATCGACGACAACCCCACTCCCACCGCCGCCCTCGCCATCGGCAACGACCCCGCTCCCGTTGCCACCCCCGCCACCGGTGATGACCCCGCTCCCTCCGCCACCTCAGCCATCGACGACAAACCCACTCCCTACGCCGCCCTCGCCATCGGCGACGACCCCGCTCCCGCTGCCACCCCCTTCATCGGAGATGACCCCGCTCCCTTCGCCAACCCCCCCACCGGCGATGACCCTGCTCCCGCCGCCACCCCCGCTATCAGCAACGGCCCCGCTCCTGCAGCCACCCCAGCCATCGGCAAGGACCCCGCTCCCTCCGCCAACCCCGCCACCGGCGACGACTCCTCCCCCGCCATCCCCGGCATTGATCCAACGCGCCTCATCCAGTCCGCGCCATACCCCTCGCCGGCTACAGCAACAACGCAGAGTATTACCAAAGACAAGGCGTGCACTTATTATAATGGTTGCAAATTCTGCGGAGCCACATTCTCGAATGAGGATGATCTCAAGACTCACTTGAGAGTGCACTCACGGCAAAGCAACAGATATAATAAAGTCAAACTACCCGTCGCATGTGCTGTTTGCCACAAATGGTACCAAACCCGCGTGGAGTACAAAGCCCACGTGACGTCAGACCACCCGCACAGCGATGAGGCGGAGAAGTTCCTCGCGGATGACGAGACGCCCTATGTGTGCGAAGTTTGTGGAGATATGTTTAAGAGACAATGCTTCTTAAAATACCACCAGCGGAAACACACGGGCGAGCGTCCCTTCAAGTGCGTCGAGTGCGACAAAACGTTCCGACTGGCAGGCGCGTTGACTATACACAGTCGTATGCACAGTCGGGCGAGGCCGCATAAGTGCGAGATGTGCGCGCGCACATTTACGTACAAAAGTGCCCTTAACAAGCACATGAAGGTACATCTCAACATCCGCCCCCACAAATGTGCTCTCTGCGACAAGGGATTCATAAATCTGTGCGACTTAAAGCTTCACATCAAATACGTACACGACAAGATACCTTGGCCCAAAAAGAAGAACAAGAAGACTGTTGTTGAAGAAGAAGATTACTAA
- Protein Sequence
- MDELKYCRVCLETDVKMFSLETKSSDSIGSVYSHLAQIPITRQTLKNVDRKLNKLESTLKVSPVVFVYEELNSTDSEICVKIEDEQYIKTENFKNTEIDNKHDSNEEFTEDYIDSMVESVAEHNEYRKTKKRKIKKGDDDSSDDEPLAKNATKSVITDPKINKKSFNFSFFDDYATVVFMTPEDAKREVLLRKESSNYKTSPFKCDLCYRGFELKTTSENHAKKHRPEYGDYECDICHIRFPQQVHLCKHKLSCHKRKFSCKLCSYICYCTEQAKSHVSLHKGMKYPCKHCGEIFSMSNSLQMHYRMKHLKESVCESVCEFCGDIFGTPKGLFLHNSKLHRQDKNDKLGPECSDCGVHFTSEVAWKRHLVKSTKHKVNRQRISYSQLEAMWEIVNKNRELATGYNKTSEAREFAKRMWKMAAVTLNSIDGGAEKDWKSWCKYWNDYKCKLRNKIASARAAVHITGGGPSDEGRLSELDLKFLQILGEDLGFTGVKPFCNSTTSAVGDDPASSATPAIGNDPAQCTTSAVSDDPAPSATPAIGDVPASAASSAIHDGPALSATPAIDDNPTPTAALAIGNDPAPVATPATGDDPAPSATSAIDDKPTPYAALAIGDDPAPAATPFIGDDPAPFANPPTGDDPAPAATPAISNGPAPAATPAIGKDPAPSANPATGDDSSPAIPGIDPTRLIQSAPYPSPATATTQSITKDKACTYYNGCKFCGATFSNEDDLKTHLRVHSRQSNRYNKVKLPVACAVCHKWYQTRVEYKAHVTSDHPHSDEAEKFLADDETPYVCEVCGDMFKRQCFLKYHQRKHTGERPFKCVECDKTFRLAGALTIHSRMHSRARPHKCEMCARTFTYKSALNKHMKVHLNIRPHKCALCDKGFINLCDLKLHIKYVHDKIPWPKKKNKKTVVEEEDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -