Oleu023941.1
Basic Information
- Insect
- Ochropleura leucogaster
- Gene Symbol
- -
- Assembly
- GCA_958449745.1
- Location
- OY288226.1:916037-917562[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.016 1.3 10.3 1.3 2 23 209 231 208 231 0.95 2 9 5.5e-05 0.0044 18.1 2.0 1 23 236 259 236 259 0.95 3 9 0.00031 0.025 15.8 2.2 3 23 264 284 263 284 0.93 4 9 0.00016 0.013 16.6 0.3 2 20 290 308 289 310 0.92 5 9 2.6e-06 0.00021 22.3 1.1 2 23 326 348 325 348 0.95 6 9 0.00014 0.011 16.8 0.2 2 23 355 376 354 376 0.96 7 9 6.6e-05 0.0053 17.9 1.4 1 23 382 404 382 404 0.98 8 9 0.014 1.2 10.5 1.0 1 23 410 433 410 433 0.87 9 9 0.0015 0.12 13.6 3.5 2 23 439 460 438 460 0.97
Sequence Information
- Coding Sequence
- ATGCCAATTTTAAGTTGTATACTTCGTGATATTTTGTCTGATACATCGGACTGTTGTTGTTTGTGCTTTAATACGATAGGAGCAACTGAAACCCCTATTAGCATTGAAGACGAGGTGTTTCTTGGTATTGATAACAGTCAGACTGAAGTACTAAGTGAAATAATATTCGCTGTGTTAGGACACAAGGTTTTGGACAACCTTTCTGTAATCAAAGTAATTTGCCAGAAGTGTACAGGAATGATTATAAACTGTTATAAATTCATCCAACAATGTCAACAAAATATAGAGGAACTGTGCTCTGCTATTGATACCTTAGAGAAACACAGCAAATTTTTTGGTGCTAGAAACTGTGATTACAAGACAGTATTTCTTGCTTTGGATACTAGTAACAATAATGTGGAGTTGTATTATGATAAATACCGAAACTGTGAGGATAAAACAATTTCACTTAAGAGATTTCAAAGATTATACAAAGATGCCCATGACTTATATGGGAATATTGAATTTGAATCAAACTACAGAGCAGATAATAAAAATTCTGCTTTGGAAAGAAAGCACAATAGTGCATTGCAATCTGTAAAATTTGCTGACATCGTACATGATGAATATAACCAAAATAATCTCAAATGTAAGACATGCTCAAAGACATATCCAACAGTTATTAAAATGAAACAGCATTACCTAAGAGTGCATGCACccaaacattttaaatgttcTTTGTGTCCAAGAAGTTTTGGGACTTCATTTCTGctgaaaaaacatacaaaagacAGCCACACTTCTGCCATCTGCAGCCAATGTGGCAGAACATTCAACAACTTACAGACTCTAAGACGTCATGAACATGGTCACAGGTGGTCAGGCCTTATCTGTCAAACATGTGGTAAGGTGTATAAACAAAAGAAAGCTTTCAATAATCACATAGATAAGAAATTGTGTGATAAGATGAGGAAGTCAAATGCAGAATCACAGCTTACATGTGATTATTGTGGAAAAAAGTATGCTCACAAATCAGGCTTAAGTAATCACATCCGCTTAGAACATGAAAATGGTAGAGCTCTGATATGTGACTGGTGTGGTAAGAAATATAGTTCTATGAGTCGGTTGAAGGACCATATTGTGACACATACAAAACACAAGAATTTTGAATGTGAACATTGTGGAGGCAAGTTTGTATCAAAGCCATCATTGCTGTATCATACAAGAACACATACGGGTGAAAAGCCATATAAATGTGAATATTGTGACAAGGCATTTTTGTCTGCATCACGCCGCTCTGAACATGTGAAGCGCCAACATACACAAGCAAACTTAGAATGTGATATTTGTCATAGTAAATTCAAAGGTAATTTTTCATTAACTCGACACAGGAACAAGCATTTTGATGCAAGAAGTAGATACTATTGTAAATTGAAATAA
- Protein Sequence
- MPILSCILRDILSDTSDCCCLCFNTIGATETPISIEDEVFLGIDNSQTEVLSEIIFAVLGHKVLDNLSVIKVICQKCTGMIINCYKFIQQCQQNIEELCSAIDTLEKHSKFFGARNCDYKTVFLALDTSNNNVELYYDKYRNCEDKTISLKRFQRLYKDAHDLYGNIEFESNYRADNKNSALERKHNSALQSVKFADIVHDEYNQNNLKCKTCSKTYPTVIKMKQHYLRVHAPKHFKCSLCPRSFGTSFLLKKHTKDSHTSAICSQCGRTFNNLQTLRRHEHGHRWSGLICQTCGKVYKQKKAFNNHIDKKLCDKMRKSNAESQLTCDYCGKKYAHKSGLSNHIRLEHENGRALICDWCGKKYSSMSRLKDHIVTHTKHKNFECEHCGGKFVSKPSLLYHTRTHTGEKPYKCEYCDKAFLSASRRSEHVKRQHTQANLECDICHSKFKGNFSLTRHRNKHFDARSRYYCKLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01085723;
- 90% Identity
- iTF_01085723;
- 80% Identity
- -