Oleu025534.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ochropleura leucogaster
Gene Symbol
-
Assembly
GCA_958449745.1
Location
OY288228.1:6270858-6276462[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0083 0.66 11.2 0.1 1 23 45 68 45 68 0.93
2 18 0.0031 0.24 12.6 0.1 2 23 97 119 96 119 0.93
3 18 0.00019 0.016 16.4 0.1 1 23 167 189 167 189 0.99
4 18 5 4e+02 2.5 1.4 1 19 194 212 194 217 0.73
5 18 0.054 4.3 8.7 0.4 2 23 226 248 225 248 0.94
6 18 9.5e-05 0.0076 17.4 2.2 1 23 255 278 255 278 0.98
7 18 0.0021 0.17 13.1 3.2 1 23 284 306 284 306 0.98
8 18 1.4e-06 0.00011 23.2 1.0 1 23 312 334 312 334 0.99
9 18 0.0057 0.45 11.8 2.9 1 20 340 359 340 361 0.95
10 18 0.025 2 9.8 1.7 1 23 417 440 417 440 0.95
11 18 6 4.8e+02 2.2 0.3 2 23 468 490 467 490 0.87
12 18 0.0045 0.36 12.1 4.8 2 23 513 534 512 534 0.97
13 18 0.0014 0.12 13.6 0.0 1 23 538 560 538 560 0.96
14 18 1 84 4.6 0.1 2 23 596 618 595 618 0.92
15 18 5e-05 0.004 18.2 0.3 1 23 625 648 625 648 0.98
16 18 6.3e-06 0.0005 21.1 1.8 1 23 654 676 654 676 0.98
17 18 1e-05 0.00084 20.4 1.1 1 23 682 704 682 704 0.99
18 18 7.5e-06 0.0006 20.8 0.7 1 23 710 733 710 733 0.96

Sequence Information

Coding Sequence
atgaaggTAAATACTACGCTCAGAACGCACGCAGAATCGCATTTCAGTGAGTTGGGAAAACATCGCCACAACCTCGGACAAATCTTACAATATTCTAATGCTACGCCAATAATGCGTCGTGGAAGCCTTGGATACATGTGCAGTTACTGTTTTGAAGAGTTCCCAGAGCCTGTAGACCTAAAAGAGCATACACTAGCAAATCACACGTCTAAAACAGACCCTACAATTACGTACGTTAAAAGCCCAAGCATGTCGGAATACAATGTTAAAATAGACATCACCAACCTTGAGTGCACGGAATGTGGTAAAACCATAGACAGTCTAGAAGATCTATTAACCCATCTGCAAGATGAccataaaataatgatatacaCTGGCATTTCAAATCATTTTATACCTTTCAAATTTCTAACAGATGACCTTACTTGCTGCCTATGTCGGGATACTTTCGACAAGTTTAAAAAACTGCAAGAACATATGCATTCACACTATCGGAACTACGTTTGTGAAGAATGCGATTCTGGGTTCATTACTCGGGCATCTTGGATCAGACATCGCAACACACACTTAAAAGGAACCTTCCCTTGCAGTTTCTGTTCTAAAGTCTACGATACGATGTTGAGGAAGCGGTCTCATGAGAGATTTAACCATATCAAAGCCGATATGCTTCCCAATAAGTGCGCATTCTGCAACAAAGGCTTCAAAGAGTACTATGATAAAGAAATCCACATGTCTGAAGTCCACGGTGCTAAAGAATCTCTATACAAATGCAACGCTTGTGACAGGAGTTATAAAAGCAAGCGAAAACTAAGGATTCACGTCAAAAGAGACCATCTATTAGAGAGGAATCACAAATGTTTAACTTGTGAAATGACATTCTTTTCTTCAAATGATGTTAAGAAGCATATGATCACACACACCGGGGAAAGGAACTTTCGATGTCAAATATGTCTGAAATCTTTTGGGAGAAAATCTTCGCTTCAAGGCCATATGCGAATCCATAACAATGATCGCAGATTTAAATGTGAATTTTGTGGGATGTCGTTTGTTCAAAAGTGTAGCTGGAAAAGTCATTATACACAAGACAAAGTTGCTACAACTACGGATGTCATAATAGACTTGGACGCTGAAGAAACAGTACCTAAAAAAGATCATGGCAAGCGACTTATACACAAGCATATAGACAATCTGGAAATAATTCTAAAATCGTCCAATGCCACGATGATACACAAACATTGCGATATGGGATATTTGTGCTGCTATTGCACGAATATTTTCAAAGAACCTACTGATTTGAAAGAACACACTTTAACAGAACATCAAAATGAAGACATTTTCAAAAGCAACATAAAAGCCAAAGCTCCATCAGCGTTCTTAGTCAAACTGGATATCACGAATCTGAAATGCACTATTTGTAGCTACAATATACTTTCTCTCGAAGATCTATTTATCCATCTGACAAAGACGCATGATAAAAATTTCCATACTGATATTAAAAATCAGATATTTCCTTTCAAGTTCGATACAAAGCAATTAAAATGCTGCCAATGTGACGCCTTTTTCGCTACGTTCAGCTCATTGCAAGAGCATATGCACAAACATTACCGAAATTTCGATTGTAAGGAATGCGATGCTGGATTCATAAATCGTACGGCTTTAGCGAGTCATACAGCGATCCACAAGGTAGGAGCCTTCATCTGCCGGCATTGCCCTGATGAATTCGACAACGTGTTCAAGAGACGAAACCACGAGTTTCGCTACCACAGTCGAACTGGCATCTTAAACAAATGCAACTTCTGCAATGAAGGCTTTCAAGAAGCTGTTTATAAGGAAGCGCATCTAGTAACGGTGCATGGAGTCACTCCTCGGAAATATGAGTGCAACGCTTGTGACAGGAGCTATCCAAACAGTAGCCTTCTTAGCGTACACGTCAGGCGCTACCATCTGCATGAAAGAAACCACAAATGTTCGGAATGTGACAAAGCATTCTTTAGGGATGGCGATTTAAAAAGCCACATGAAAGTTCATATAGGGtctaaaaattttaaatgtgaaGTCTGTTCTAGACGCTTTGCTACGAAATCTATACTGACTCAGCATATGAGAGTTCATAATAATGATAGGCGCTACAAATGTACAATGTGTGATAAAGCGTTTGTGCAGAAGCCCAGCTTGAACTATCATGTAAGGGCGAAGCACCCAAATGATTATCAAACTTAA
Protein Sequence
MKVNTTLRTHAESHFSELGKHRHNLGQILQYSNATPIMRRGSLGYMCSYCFEEFPEPVDLKEHTLANHTSKTDPTITYVKSPSMSEYNVKIDITNLECTECGKTIDSLEDLLTHLQDDHKIMIYTGISNHFIPFKFLTDDLTCCLCRDTFDKFKKLQEHMHSHYRNYVCEECDSGFITRASWIRHRNTHLKGTFPCSFCSKVYDTMLRKRSHERFNHIKADMLPNKCAFCNKGFKEYYDKEIHMSEVHGAKESLYKCNACDRSYKSKRKLRIHVKRDHLLERNHKCLTCEMTFFSSNDVKKHMITHTGERNFRCQICLKSFGRKSSLQGHMRIHNNDRRFKCEFCGMSFVQKCSWKSHYTQDKVATTTDVIIDLDAEETVPKKDHGKRLIHKHIDNLEIILKSSNATMIHKHCDMGYLCCYCTNIFKEPTDLKEHTLTEHQNEDIFKSNIKAKAPSAFLVKLDITNLKCTICSYNILSLEDLFIHLTKTHDKNFHTDIKNQIFPFKFDTKQLKCCQCDAFFATFSSLQEHMHKHYRNFDCKECDAGFINRTALASHTAIHKVGAFICRHCPDEFDNVFKRRNHEFRYHSRTGILNKCNFCNEGFQEAVYKEAHLVTVHGVTPRKYECNACDRSYPNSSLLSVHVRRYHLHERNHKCSECDKAFFRDGDLKSHMKVHIGSKNFKCEVCSRRFATKSILTQHMRVHNNDRRYKCTMCDKAFVQKPSLNYHVRAKHPNDYQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01085634;
90% Identity
iTF_01085634;
80% Identity
-