Oleu014319.1
Basic Information
- Insect
- Ochropleura leucogaster
- Gene Symbol
- -
- Assembly
- GCA_958449745.1
- Location
- OY288214.1:10408232-10422379[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00052 0.042 15.0 0.2 2 23 142 163 141 163 0.93 2 13 0.00076 0.061 14.5 2.4 1 23 169 191 169 191 0.96 3 13 8.7e-05 0.0069 17.5 0.3 1 23 283 305 283 305 0.98 4 13 0.00079 0.063 14.5 0.0 3 23 384 405 382 405 0.90 5 13 0.0007 0.056 14.6 0.0 1 23 420 442 420 442 0.97 6 13 0.0007 0.056 14.6 0.0 1 23 462 484 462 484 0.97 7 13 0.0007 0.056 14.6 0.0 1 23 504 526 504 526 0.97 8 13 0.0007 0.056 14.6 0.0 1 23 546 568 546 568 0.97 9 13 1.8e-05 0.0015 19.6 0.2 1 23 600 622 600 622 0.98 10 13 0.00081 0.065 14.4 0.2 1 23 628 650 628 650 0.97 11 13 0.00046 0.037 15.2 0.3 1 23 656 678 656 679 0.95 12 13 0.03 2.4 9.5 1.3 1 23 692 714 692 714 0.95 13 13 0.037 3 9.2 0.0 1 20 848 867 848 870 0.93
Sequence Information
- Coding Sequence
- ATGGAGGGGGAAGCTGAGGACTTCAACCTCCAATGGGAGGAAGAAGTTGAAGTGAAGCACAGTCCAGGTGCTGTGGAGCCAGAGGAAGTTATAGCAGGCCTAGAGAATGTGCAACACACAGGATATTCAAACATGACATCCGAGGAGATGATGAGCACGGACCAAATGGCTGCAGAGAACTTAATGTTTTTATCTCAAGATGTAATGAGCTATACTGAGACAGCTGAACTTGCCGATGATCCTAGCGTGGAGTGTGTTACAGAAGAGGTCATTACGGACGATTGGGTGGTACCTGGTGGGCAGGAAAGagtgGAAGTTCCTATGGATCATCTGAATAATACTGAAGTTGTtatgaaagaagaaaatgaCCTTGATGTTCCTTTACCAACAGATCAAGACGAGTACACAGCAATGCGTCCTTGGCCGTGCGACTTTTGTTCGCGACGGTTCCGCAAGAAAGCCGCGCTCATGAACCATATGGTGGCCCATCAGAACGACCGGCCGCACGCATGCAACCTCTGCGGCGTGCGGTACGTGCGCAAATGCGACCTCATGAACCATCTCAAAGTCCACGCGTTTGTGCCTGACAACCCCGATTCTATAGATTATGAAGATGTTTTAGACAATAACCaaattgtaaaaccaaagaAGAAACGCGGTCGGCGGAAAAAAAACCCTGAACCTGTGGAAGAGAACGGCATGTGGGAGAACATGACGTCGGCGCGCACGCAACAGTGGTCGCGGCGAGGGCGATCCCCGGCGCGGCCCCCGCCCACCCCGCCGTCGCCCCCGGCCGTGCCCCCGCCGCCctcaccgccgccgccgcccagCGACCCCTCACGACCTTTCGTCTGTAGGCACTGCGGAGTTGGTTTCGCTAGGGAGAAAGCTTTGCAGTCACATGCCAGGGTGCACGGCGGCGATTCCCCGGTGGAGTGCGGCACGTGCGGTGAGCTGTGCTGGTCACGTGAGGCGCTGGCCTCGCACTCGCAGCAGCGGCACCCGCACCTGCCGCCGCGCGACCAGCCGCCCGACCCGCCTTACGAGGACTCCGATTCCGGAGACGACATGGAGTTCCGTCTCTCTCCGTTGTCACACGGGGCGTCTGATCGCGCGGTGTACGACACAATGCGGGGGCCTGAGCTGTTCTGTCAGGACTGCGGTGTCGCCTTTCAGCGAGCCGACCTGCTGCGGAGACATGTGGCTGCGGCACACAGTTACAAGCGGCACGACAGCTCCAGCAGCACCTGGGCGGAACACACGTGCGACGTGTGCGGCGAGGGCTTCGCGGACGCGCTGCAGCTGCTGGCGCACGCCGAGACGCACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGCTGCAGCAGCACCTGGACGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCGCGGACGCGCTGCAGCTGCTGGCGCACGCCGAGACGCACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGCTGCAGCAGCACCTGGACGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCGCGGACGCGCTGCAGCTGCTGGCGCACGCCGAGACGCACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGCTGCAGCAGCACCTGGACGGAGCACACGTGCGACGTGTGCGGCGAGGGCTTCGCGGACGCGCTGCAGCTGCTGGCGCACGCCGAGACGCACGCCGAGCGACACCGCGCGCCGCACGCGCAGCCCAGGTTAAAAAGAATGGCTCGAGGTCGAAATAATACGTCATCATCGAGTAATTCAAGGCAATTCCCTTGTCGAGTTTGTGGTAAGGTGTTTGGGTCGCGCAGCTCACAACAGATTCACATCCGGATCCACACGGGCGAGCGGCCCTACGCGTGTCGGTTCTGCTGGAAAGCGTTCGCGGATGGCGGCACCTTACGGAAGCATGAAAGAATACATACAGGCGAGAAACCATACGCATGTGCGGTGTGTCCCCGCGCGTTCAACCAGCGCGTGGTTCTACGAGAACATGTGCGCTCGCACCACTCTGCTCCCGACAGGCGGGCTAACGGTGGTCCCGCTTTCTGCTGTGTAGTGTGTGGCCGCACGCTACACTCGAGCGTAGAGCTGGTGCAACACCTCATACAGCACTGTGACGCCAACACGGCGCTCAAGAGACAACCTCAGACGGGGCCTCGCAAGTACAAGAGACGACGAAAATTGAAGACAGATCATTCCCCGGTTGGTGACTGGGAGCGTAACTCCGCCCCGCCCGCATCGCGCTCCCCCTCCCCGGTGTCGTCCCCGCAGCTGTCGCCCGCGTCCCCGCCCTCCCCCGCGTCCCccgcgcgccggcgccgccgccgctcgcccgcgccgcgcccgcgcatGATCCACACGGCGGAGCGGCCGGccccgcgccggcgccgcgcccCGCCCCCGCCCtccccgccgcgcgccgcccggcgccgccccccgcgccgcccggcCGACGACCTGCGCGCCATCCGGCCGCGCGAGCCGGAGCCGGCGCAGGACGCGAGCGGCCCGTACAAGTGCGAGATGTGCGCGCTGGAGTTCCCGCGGCGTGACGCGCTGCTGCTACACGTGCCGGTGCACATTTGA
- Protein Sequence
- MEGEAEDFNLQWEEEVEVKHSPGAVEPEEVIAGLENVQHTGYSNMTSEEMMSTDQMAAENLMFLSQDVMSYTETAELADDPSVECVTEEVITDDWVVPGGQERVEVPMDHLNNTEVVMKEENDLDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNPDSIDYEDVLDNNQIVKPKKKRGRRKKNPEPVEENGMWENMTSARTQQWSRRGRSPARPPPTPPSPPAVPPPPSPPPPPSDPSRPFVCRHCGVGFAREKALQSHARVHGGDSPVECGTCGELCWSREALASHSQQRHPHLPPRDQPPDPPYEDSDSGDDMEFRLSPLSHGASDRAVYDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSSSSTWAEHTCDVCGEGFADALQLLAHAETHAERHRAPHAQPSCSSTWTEHTCDVCGEGFADALQLLAHAETHAERHRAPHAQPSCSSTWTEHTCDVCGEGFADALQLLAHAETHAERHRAPHAQPSCSSTWTEHTCDVCGEGFADALQLLAHAETHAERHRAPHAQPRLKRMARGRNNTSSSSNSRQFPCRVCGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAFCCVVCGRTLHSSVELVQHLIQHCDANTALKRQPQTGPRKYKRRRKLKTDHSPVGDWERNSAPPASRSPSPVSSPQLSPASPPSPASPARRRRRRSPAPRPRMIHTAERPAPRRRRAPPPPSPPRAARRRPPRRPADDLRAIRPREPEPAQDASGPYKCEMCALEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01064911;
- 90% Identity
- iTF_01085643;
- 80% Identity
- -