Oleu021462.1
Basic Information
- Insect
- Ochropleura leucogaster
- Gene Symbol
- -
- Assembly
- GCA_958449745.1
- Location
- OY288222.1:3000621-3001592[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-14 2.2e-11 44.0 0.2 1 45 16 60 16 60 0.95 2 2 5.2 4.5e+03 -1.8 0.0 28 42 247 262 246 263 0.75
Sequence Information
- Coding Sequence
- ATGACTCCAACTAATTCCACTCGTAAGAAAAGAGGAGAGTCGTGGTCTGAGGAAACTATGAAAGCTGCCATTAATGCTGTGCAAAGAGGCCATTTGACTCAGCGATCAGCAGCAGCAAGGTATAATATTCCGCGAAGAACTTTGAGAGATCACTTAAAAACAGGCGAAGAAATTAAACGTTTGGGGAGAAACCCTATTTTATCGAATAATCAAGAAAAAGATTTAGCTTCGCGGATAAAAAGATTTGCAAGCATTGGGATTCCACTAACGCCTGAATTCATTAGAAaacaagcttttttattttgcgaGAGACATGacatcaaaaataatttgaatagttCCAAAAGGATTGCCGGTGTAGATTGGTTGAGACACTTTTTAAGAAGAAATCCATCCATTAGTAAACGAAAACCGCAAATGATGAATCCAGCTCGAGCACAAAAgttgaataaacctattgttcAACAACATTTTCAGAGTATTCGCAAATTATATGATGAGTTGGATATACTGCGACATCCAGAAAGGTTATATAATATGGACGAGAAAGGATGTCGAATAACTGTGCATAAACAGCACTCAGTTTTGGCTGCAAAAGGAAGCAAAAGGGTTCATCTTATTGCTCCGGAACACGCAGAGAATGTGACCATTGCGATGTGTGTGAATGCTATAGGTACTACGATTCCAGCTATGATCATTTTTAAAGGCCAAAGGCAAAGACTAGATCTAACAGAAAATCTACCAGCTGGAACGTTAGTTAGAATGGCACCAAAGGGAAGTATGACTTCAGATTTATTTGTGGAATTTATTCAGCACCTGGCAAAACATAAAGTCGCTGAtaaatgtttattcatttttgatgGTGCAAAGTGCCATCTATCAGTCGAGGCGCTAGATGAAGCTGATAAAAATGACATAGTTCTCTACTGCCTTCCTTCAAATACAACGCACGACGCTGCAACCGTTAGATAA
- Protein Sequence
- MTPTNSTRKKRGESWSEETMKAAINAVQRGHLTQRSAAARYNIPRRTLRDHLKTGEEIKRLGRNPILSNNQEKDLASRIKRFASIGIPLTPEFIRKQAFLFCERHDIKNNLNSSKRIAGVDWLRHFLRRNPSISKRKPQMMNPARAQKLNKPIVQQHFQSIRKLYDELDILRHPERLYNMDEKGCRITVHKQHSVLAAKGSKRVHLIAPEHAENVTIAMCVNAIGTTIPAMIIFKGQRQRLDLTENLPAGTLVRMAPKGSMTSDLFVEFIQHLAKHKVADKCLFIFDGAKCHLSVEALDEADKNDIVLYCLPSNTTHDAATVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -