Odup013709.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- THAP3
- Assembly
- GCA_951361185.1
- Location
- OX592704.1:2251914-2264956[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0017 0.12 13.4 0.7 1 23 386 408 386 408 0.96 2 12 0.073 5.3 8.3 0.2 2 23 416 438 416 438 0.95 3 12 0.03 2.2 9.5 4.7 1 23 442 464 442 464 0.97 4 12 0.15 11 7.3 0.3 1 23 469 494 469 494 0.97 5 12 0.26 19 6.6 0.7 2 23 509 531 508 531 0.92 6 12 0.0041 0.3 12.2 0.3 1 22 543 564 543 568 0.93 7 12 0.026 1.9 9.7 0.7 2 23 587 609 586 610 0.94 8 12 2.6 1.9e+02 3.4 2.5 2 23 629 651 628 651 0.95 9 12 0.00039 0.029 15.4 0.9 2 23 665 686 665 686 0.97 10 12 0.074 5.4 8.3 0.0 3 23 693 713 692 713 0.93 11 12 0.0022 0.16 13.1 5.1 1 23 719 741 719 741 0.98 12 12 1.7e-06 0.00012 22.9 1.3 1 23 747 770 747 770 0.98
Sequence Information
- Coding Sequence
- ATGGTTTCTTATTGCTGTGTAAAAGGATGTCAcaataatagcaataataaaaagaaagatccaaaTTCAGTTGTATCTTTTCACGCGTTTCCTTCAAATCTAGAGCTTAGATTGAAATGGCTACGAGCTATAGGCCGCCCTGATTGGGAGCCCCCGAATCACACTCGCGTCTGCAGCGCACACTTCAGGTTCGACCAGATCAACCATGATAGCTGCCGAACTAGAATTAAGGATGATGCTTTTCCCGTGGTTGCTTTACCTCCAAACTCTAACTTTGAAGCATCTCACATAGAAGTATGCAGGATATGCCTTGCCACTGATCTCAAGATGTACAGCCTCAAAGACGGTTACTTGAGGACAGCCATGGAGTCTGTAGCTGGATTTAATgatAACTACAACATAGAGGGCTTACCGCAGTTTGTTTGCTATGAGTGTGCAGCTAGTCTAATGAAATGTTACAGACTTATTGAGAAGAGTATGATTGCTCAGGCAACATTGCTTGATATATTTGCAGAGAATGGGCAGATaacaaaaaacttaataaagaaTCAAAACAGAAATCAGTTAAATTTGAACTCAACGTTAAGGTGTTGCAAACTCCAGGataattatgaatttaaatatgATTGTGATGACAATCTCTCCCATATTAGAAATAATATACAGAGTAATGATTATAAAACAGAATTAAATATACATGTGGCTTCTTTAAAAATTGATGCAGAAGAACAATTAAAACATGAAGAAGCTGAAACAATAGCAtatttttcagaaaataatAGTAAAGAAGCCATTTCATTGGTACATAATAAGTATGATTTTTCTGAGGTTGATGATATCAATATCGAATCTATCATTAGTGACCATGAACATGCAAGTGCTCATAAAAACTCTTCAATTGATGATATTGTAATGTCTGATGATGGGTATGAATTTTTGGATGATGTAAAGCCTAAGAGGATGTCTAAGAAAAAGaaaGACAAAATTTCTGCTGAATTAGTGAATAAAAAAGCTAAAAGGAAAAGTGTTAATGGATTGACACCAGACGAAGTGGATATGCAGAAGTATTTTACTATTGTGCGATTATCTTTAGAAGACCAAATAAAAGAATGGGACAGGACACCCCAGAAACGCCATTTCACCAGCGAGACTATGTACGAGTGTGAAGTATGCTCAAAGATATTCGCTCACGTCAACTCCTATAGAAATCACATCGGTAATCACGATCCTAGTCGCGGTAAAGCTGAATGTCCGGTGTGCAAGCTGCGCTTCAAAACCGATGTGCTAGCGAAGTATCATCTAAATAGAGCACACGCTAAGAAATTCTACTGCAAGACCTGTCATAAAGTGTTTAATAATGTTGGTGTAGCCAAGAAGCATCACCGCTGGCACTCGGGATACATGTACAAGTGTACAGCGGCGCGGTGCACGTTCGCGAGTGCGCACGAGTCGGCGCTGAGTGCGCACGCGCGCCGCCTACACGCGCACAACAACGCGCACGAAGCCCGGTGCGCGTACGCATGCGTATGTGCGCACTGCGGCCTCGCCTTCCTCACTCGTAAAGGACTCGCGCTGCACACCGGAACCGCGCATAGGGACTTGCCGGTAATAGAACCCAATAACAGTTACCGATGCGACCAGTGCAATATAAGCTTTAGTTCGGAGGGTGCAAGAAGGGTTCATCTCCTGACATCCTCTCAGCATAAGAAGAGATCTGATATGTGCGACACAACCCCAAAGGATCCAAGCCTTCAAACGACTTGCAGTAAATGTGGTATGGACTTGAAGTCATTACGCGAACTGATCGCTCACACTAAGGCGGAACACCATCGACCTTCGCAGAAGAGATCCATGTACCGACTGCCAGATGACAAGTATCCCACTAGCTGCGAACATtgtaGCGAAGTAGTGAACAACCGCAAGGAGCACTGGTGGCACGTACGAAAACAACACCCCAAGGAGAAACACTCGTACAGACCTGTCGTCACCGCCGTCTGCGACACTTGCGGGAAGGGCTTCCAGAACTCTACAAAGCTTCAACTGCACACGTTGCGGCACGGTCGTCCTACGGTCGCATGTGCGTCTTGTCCGCGTTTGTTCTACGACAAGTACGCACTGGCGCGTCACGGCGCCGTGCACTCGGCCGCCAGCCCGCACCGCTGCCGCACCTGCGGGAGGGGGTTCAAGCTCAAGTGTTACCTCGAGAGGCATGCTAGGgTTCACACAGGATTAACACCATACGAATGCACGATATGtgataaaaagtttaaattttcgACTAGTCTCAATCTACACGTACGCACCGTGCACTACAAGCTACCGCACCCGCCTAGAAAGAAGCGAACCTGCAAACCTAACATAAATTCAAGCTTACTTGACACAAATACTGATAATGTTATGTAA
- Protein Sequence
- MVSYCCVKGCHNNSNNKKKDPNSVVSFHAFPSNLELRLKWLRAIGRPDWEPPNHTRVCSAHFRFDQINHDSCRTRIKDDAFPVVALPPNSNFEASHIEVCRICLATDLKMYSLKDGYLRTAMESVAGFNDNYNIEGLPQFVCYECAASLMKCYRLIEKSMIAQATLLDIFAENGQITKNLIKNQNRNQLNLNSTLRCCKLQDNYEFKYDCDDNLSHIRNNIQSNDYKTELNIHVASLKIDAEEQLKHEEAETIAYFSENNSKEAISLVHNKYDFSEVDDINIESIISDHEHASAHKNSSIDDIVMSDDGYEFLDDVKPKRMSKKKKDKISAELVNKKAKRKSVNGLTPDEVDMQKYFTIVRLSLEDQIKEWDRTPQKRHFTSETMYECEVCSKIFAHVNSYRNHIGNHDPSRGKAECPVCKLRFKTDVLAKYHLNRAHAKKFYCKTCHKVFNNVGVAKKHHRWHSGYMYKCTAARCTFASAHESALSAHARRLHAHNNAHEARCAYACVCAHCGLAFLTRKGLALHTGTAHRDLPVIEPNNSYRCDQCNISFSSEGARRVHLLTSSQHKKRSDMCDTTPKDPSLQTTCSKCGMDLKSLRELIAHTKAEHHRPSQKRSMYRLPDDKYPTSCEHCSEVVNNRKEHWWHVRKQHPKEKHSYRPVVTAVCDTCGKGFQNSTKLQLHTLRHGRPTVACASCPRLFYDKYALARHGAVHSAASPHRCRTCGRGFKLKCYLERHARVHTGLTPYECTICDKKFKFSTSLNLHVRTVHYKLPHPPRKKRTCKPNINSSLLDTNTDNVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01083400;
- 90% Identity
- iTF_01083400;
- 80% Identity
- iTF_01083400;