Odup014982.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- -
- Assembly
- GCA_951361185.1
- Location
- OX592705.1:10783954-10788565[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0022 0.16 13.1 0.6 1 23 297 320 297 320 0.92 2 11 0.0075 0.55 11.4 2.1 1 19 330 348 330 352 0.90 3 11 6.3e-05 0.0046 17.9 4.5 2 23 358 379 357 379 0.97 4 11 0.00049 0.036 15.1 1.3 1 23 383 406 383 406 0.97 5 11 0.45 33 5.8 1.6 1 23 409 431 409 431 0.96 6 11 0.00046 0.034 15.2 0.9 2 23 510 531 509 531 0.95 7 11 5.9e-05 0.0043 18.0 3.1 1 23 579 601 579 601 0.97 8 11 5.7e-05 0.0042 18.1 1.9 1 23 606 628 606 628 0.97 9 11 0.0021 0.16 13.1 4.6 2 21 635 654 634 657 0.95 10 11 4.5 3.3e+02 2.6 0.3 1 11 665 675 665 684 0.81 11 11 0.06 4.4 8.6 1.4 3 19 697 713 696 718 0.94
Sequence Information
- Coding Sequence
- ATGGATCAGGGTACCGCGGCGGACGACAACGAAGAGATGTATCCATTCCTTCTCATACCCAGAAAGTGTACAGCACTTGATACTAACTGTAATACTTCTGAAAACGTATTAATCAACGTGAACATCACTTCTCAAGACACTGACGGTAACGAGACATGTATTTATTCGGGATATTGCAACATTAAGCTCATAGACAATTACAATatagatgtatgtgaagatcaGAATGAAAACTATGAGATTGATTTACCGGTGATTGTATCCGAAGCCAACCAGATAGGATATCCACCATACAACCAATCTCAGGTGTGGATAGACCCAGCGAGGAGTCCCTATGTGTATAACAACTACAACATAGTTAATCCCTCAGAAAATTATTCGGTATACCATCAATCTGCAACCGGACACATAACAGTTAAGCAGCATAACACATACATTACACAAAATGTGTACAATTATAATGAGAGTGTACAATGCTCAGTGTCCGAAGATGTAGAACAtaaaagatatcaaaaaacaCAAGAGACTCAGAACACAGAGactaattataatttgtatgaaCCGGATGAGTTTGAATGTGGAGTGTTTCTGTCTCAGTTACCCGGAGAAATACTAAATGAAAAGGAAAATAAGGCTAGAGAGGAAAGGAAGTACATAGGGCTCCAGAGTGATAATGGTGCATTGAAACAACTAATGTCTTCGGATATACAATCCGTGTCAAAACAACGTaagacaatattatttttaggtcACGATTCTGAGTCTGGCCAAACAATTCACAATATTTTAGTGAATGATCCTATGTTAGAGTGCTCAAGTAATGGTGAAGTAGAAAATGAAGTTACCATTGaaGACTCTAATACTCCGCCAAACCCAAACCAAAAGAAATACCAATGTGACAAATGCAAACAAATATTTGATCAAATAACTGCATTCAAGCAGCACATGGTTGCCAACCATATTGAGAATTCCAAAACCGGGGTCAAATTTATGTGCACAGAATGTGGCAAGACTTTAAAAAACCAAGAAAAGTTTGAGTTACACTGTATGGGCCATGGCGATCCAGAATTAGAATGCGATACGTGCCATAAAGTGTTTGCTTCAAAATTCACCTTACGCGCTCACCATAAGACTCATACTCGCAAATACGTTTGCCATCTCTGTATGAAGACTTATGCAACTACTGAAGAATTGAAGAATCATATGGAGaagatacattattatttttcttgtcaCTTGTGTTCTTTTGTTGCGAAGAAGTTCTCGGTTTTGGCGAGACATCAAGACCTGCATATAGAAAGTGCTGGGTCTAGTTCAATTGATGAAATTGGAAGTGAATCtgatattattacaccatccccTGAAGGGCATGACACACTGTCTAAAGACGATGTAGAAAGTAAGGATACTGTCTCACAATATGATCAGATCAGTGATGCTGACTCTGTGATAGCTAAAGTGATgtccaataaaatatttctgcTGCATGCCAAGAAGCTCACTAAAACACACAGAAGACAAAATAAGtCGTGTAAAGTGTGCTTCAAAAAATTCGAACGCATCGGCGATCTAAAACGTCACCTGATCGAGCACATCGTCAAGAGCACCCTGTCCAAAACGTCAGTGAGTCGCAACGGAACACTGAACATTAAATGCGAGGTATGTCACACAGAAATCTTCCACAAAATCGACCGATATAAAGCTCATCTCCGCGAACATGCCAAACTAACCCTCTACAAATGCATATTCTGCGACAAATCATTCAGCGACTCCAGTAATTTTtccaaacacaaaaaaattcaCGGCACCACATTCTTCCAATGCGATCTGTGCCAAAGGAAATTTAACTCTAAGAAGACTTTGATCCAGCACATTGAgtaccataataataattcgCCTATCCAATGTCTTTACTGCGATAAGATCTTTCATTTCAAATCTATGCTAAATAAGCATATAAGATGTACACATAAGAAGGAAACAATGTTAAAGTATAGATGTAAGTTATGTCACAGTATTTTTAGAGCATTGAAAGACAAGTGGGACCATGAATGGTCAGTTCATAACATTAGAAAGATTATTGTCGACTGTCTGGTTTGTGGAGCGAAATTTAGGAAATATGCAGAGCTGAAACGACATTGTATTGATAAACACAAGCTTGATATTCCACCAGCTAAGAAACTGTTAAAGAGGAAAAAGTAG
- Protein Sequence
- MDQGTAADDNEEMYPFLLIPRKCTALDTNCNTSENVLINVNITSQDTDGNETCIYSGYCNIKLIDNYNIDVCEDQNENYEIDLPVIVSEANQIGYPPYNQSQVWIDPARSPYVYNNYNIVNPSENYSVYHQSATGHITVKQHNTYITQNVYNYNESVQCSVSEDVEHKRYQKTQETQNTETNYNLYEPDEFECGVFLSQLPGEILNEKENKAREERKYIGLQSDNGALKQLMSSDIQSVSKQRKTILFLGHDSESGQTIHNILVNDPMLECSSNGEVENEVTIEDSNTPPNPNQKKYQCDKCKQIFDQITAFKQHMVANHIENSKTGVKFMCTECGKTLKNQEKFELHCMGHGDPELECDTCHKVFASKFTLRAHHKTHTRKYVCHLCMKTYATTEELKNHMEKIHYYFSCHLCSFVAKKFSVLARHQDLHIESAGSSSIDEIGSESDIITPSPEGHDTLSKDDVESKDTVSQYDQISDADSVIAKVMSNKIFLLHAKKLTKTHRRQNKSCKVCFKKFERIGDLKRHLIEHIVKSTLSKTSVSRNGTLNIKCEVCHTEIFHKIDRYKAHLREHAKLTLYKCIFCDKSFSDSSNFSKHKKIHGTTFFQCDLCQRKFNSKKTLIQHIEYHNNNSPIQCLYCDKIFHFKSMLNKHIRCTHKKETMLKYRCKLCHSIFRALKDKWDHEWSVHNIRKIIVDCLVCGAKFRKYAELKRHCIDKHKLDIPPAKKLLKRKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00762000;
- 90% Identity
- -
- 80% Identity
- -