Basic Information

Insect: Ochropacha duplaris
Gene Symbol: -
Assembly: GCA_951361185.1
Location: OX592690.1:13704337-13707345[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0045 0.33 12.1 0.6 1 23 294 317 294 317 0.92

2 12 0.0075 0.55 11.4 1.5 1 19 332 350 332 354 0.90

3 12 1.4e-05 0.001 20.0 3.5 2 23 360 381 359 381 0.97

4 12 0.0097 0.71 11.0 0.5 2 23 386 408 386 408 0.95

5 12 0.2 15 6.9 0.4 1 23 411 433 411 433 0.97

6 12 0.00054 0.04 15.0 1.0 2 23 513 534 512 534 0.95

7 12 1.8 1.3e+02 3.9 3.3 1 23 553 576 553 576 0.96

8 12 2.1e-06 0.00015 22.6 4.4 1 23 582 604 582 604 0.98

9 12 0.00013 0.0093 17.0 1.5 2 23 610 631 609 631 0.96

10 12 0.00051 0.037 15.1 6.3 2 21 638 657 637 660 0.95

11 12 0.79 58 5.0 0.4 1 19 668 686 668 687 0.87

12 12 0.14 10 7.4 0.9 3 19 700 716 698 717 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0045	0.33	12.1	0.6	1	23	294	317	294	317	0.92
2	12	0.0075	0.55	11.4	1.5	1	19	332	350	332	354	0.90
3	12	1.4e-05	0.001	20.0	3.5	2	23	360	381	359	381	0.97
4	12	0.0097	0.71	11.0	0.5	2	23	386	408	386	408	0.95
5	12	0.2	15	6.9	0.4	1	23	411	433	411	433	0.97
6	12	0.00054	0.04	15.0	1.0	2	23	513	534	512	534	0.95
7	12	1.8	1.3e+02	3.9	3.3	1	23	553	576	553	576	0.96
8	12	2.1e-06	0.00015	22.6	4.4	1	23	582	604	582	604	0.98
9	12	0.00013	0.0093	17.0	1.5	2	23	610	631	609	631	0.96
10	12	0.00051	0.037	15.1	6.3	2	21	638	657	637	660	0.95
11	12	0.79	58	5.0	0.4	1	19	668	686	668	687	0.87
12	12	0.14	10	7.4	0.9	3	19	700	716	698	717	0.96

Sequence Information

Coding Sequence: atggatcAGGGTACAGCGGCAGACGACAGCAAAGAGCTGTATCCATTCCTTCTGATACCCAAAAAGTATACAACACTTAAAAATAGCAGTAATTCTTCtgaaaacgtatttatttatgtgaacATCACTTCTGAAGACAGTGATGGTAACAAGATATGTATTTATTCAGGAAATTGCAACATTAATCTCATAGACAATTACAACATAGATGTAAGTGAAGATCAGAATCAAAACTATGAGAATGATTTACCGGTGATTATATCAGAAGTCAACCAGATAAGTTATCCACCATACAGCCAGTCTCAGGTGTGGATAGACCCAGCAACGAGTCCATTTGTCTATAACGGACAAATGGACTCGGAAAAATATCCGAAATACCATCAAACTGCAATGGGACATGTAACCTTTGAGCAACATAACACATACATTACGCAGAATGTATACAATTCTAATGAGAGTGTTCAATTCTCAGTGCCTGAAGACATAGAACATAAAAGATATCATAAAACACTAGAGGCTCCAAACACAGAGACTAATTACAATTTGTACGAAGATGGTGATTTTGAATGTGAAGTGTGTCTATCTCAGTTACCCAGTGTAATACTGAATGAAAAGGAGAATAAGGCTATAGAGGAAAGGAAGTATATAGGGCTTGAGAGTGATAATGGTGCATTGAAACAGCTCATGTCTACGGATATACAGTCTGAGTCAAAGCAACGTAAGACTATCTTCTTTTCAGGTCAAGATTCTGAGTCTGGGCAAACAATTGAGAATATTTTAGTGAATGATCCTATGTTAGAGTGCTTGGGTAATAGTGAAGTAGAAAAAGAAGTTACCATTGaagAGTCTGATACACCGCTAAACACAAACCAAAAGAAATACAAATGTGACAAATGCAAACAAATATTTGATCAAATAATGGCATTCAAGCAGCACATGGTTGCTAACCATGTACCAATTGTATTTGGTGAGAATTCCAAAACCGAGGTCAAATTTATGTGCACAGAATGTGGCAAGACCTTAAAAAACCAGGAAAAGTTTGTGATACACTGTATGGCCCATGGTGATCCAGAATTAGAATGCAATAAGTGCCATAAAGTGTTTGCTTCAAAATTCACCTTACGCACTCACCAAAAGATTCATACTCGCAAAAACGTTTGCAATTTCTGTATGAAGACTTATGCTACTACTGATGAATTGAAGAATCATTTGGAGAAGATACATTTCAATTTTTCTTGTGACTTGTGTACTTTTGTTGCAAACAAGTACTCGGTTTTGTCGAGACATCAAGAAGTCCATGCAGAAAGTGCTGGGACTAGTTCATTTGATGAAAATGGAAGTGAAACtgatattattacaccatccccCGAAGGGCATGAAACACAGTCGAAAAACGATATAGAAAGTAGGGATATATCTGTCCCTCAATATGATCAGATCACTGAAGCCGACTCTGTGATAGCTAAAgtaatatccgataaaatattTCTGCTCCATTCCAAGAAGGTCACTAATacacaaagaaaacaaaataagtcGTGTAAAGTGTGTTTCAAGATATTCCAACGCATCAGCGATCTAAAACGTCATCTGATCGAGCACATCGTCAAGAGCACCCTATTGAAAACCCAAGTGAGTCGCAACGGAACCCTGAACTTCAAATGCGAGGTATGTCACACAGAAATCTTCCACAATATTGACCGGTTCAAAGCTCATCTCCGCGAACATGCCAAACTAACCCTCTACAACTGCACATTCTGTGACAAATCTTTCAGTGATTCAAGTAACTTTTCCAAACACAAGAAAACACACGGCAGCACATTCGTCCAATGTGATCTGTGCCAAAGGAAATTCAACTCTAAGAAGACTTTGACCCAGCACAttgaataccataataataattcgCCTATCCAATGTCATTATTGCGGCAAGATCTTTCATTTCGAATCTATGCTAAAAAAGCATATGAGATGTACACATAAGAAGAAAACAATGTTAAAGTATAGATGTAAGTTGTGTAAcggtatttttaaaacattgaaaGATAAGTGGGACCATGAATGGTCAGTTCATAACATTAGGAAGATGATTATCGATTGTCTGCTTTGTGGAGCGCAATTTAGGAAATATACAGAGCTGAAACGCCATTGTGTTGATAAACACAAGGTTGATATTCCACAAGCTAAGAAACTGTTAAATAGGGAATAG
Protein Sequence: MDQGTAADDSKELYPFLLIPKKYTTLKNSSNSSENVFIYVNITSEDSDGNKICIYSGNCNINLIDNYNIDVSEDQNQNYENDLPVIISEVNQISYPPYSQSQVWIDPATSPFVYNGQMDSEKYPKYHQTAMGHVTFEQHNTYITQNVYNSNESVQFSVPEDIEHKRYHKTLEAPNTETNYNLYEDGDFECEVCLSQLPSVILNEKENKAIEERKYIGLESDNGALKQLMSTDIQSESKQRKTIFFSGQDSESGQTIENILVNDPMLECLGNSEVEKEVTIEESDTPLNTNQKKYKCDKCKQIFDQIMAFKQHMVANHVPIVFGENSKTEVKFMCTECGKTLKNQEKFVIHCMAHGDPELECNKCHKVFASKFTLRTHQKIHTRKNVCNFCMKTYATTDELKNHLEKIHFNFSCDLCTFVANKYSVLSRHQEVHAESAGTSSFDENGSETDIITPSPEGHETQSKNDIESRDISVPQYDQITEADSVIAKVISDKIFLLHSKKVTNTQRKQNKSCKVCFKIFQRISDLKRHLIEHIVKSTLLKTQVSRNGTLNFKCEVCHTEIFHNIDRFKAHLREHAKLTLYNCTFCDKSFSDSSNFSKHKKTHGSTFVQCDLCQRKFNSKKTLTQHIEYHNNNSPIQCHYCGKIFHFESMLKKHMRCTHKKKTMLKYRCKLCNGIFKTLKDKWDHEWSVHNIRKMIIDCLLCGAQFRKYTELKRHCVDKHKVDIPQAKKLLNRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -